miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 5' -61.9 NC_004684.1 + 27624 0.67 0.343941
Target:  5'- aGCucaCGCGUGGUGGCgcaCCUcggugucgagGuGCCCACg -3'
miRNA:   3'- -CGuucGCGCACCACCG---GGA----------C-CGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 58336 0.7 0.234347
Target:  5'- --uGGCGCGcccGGUGGCCCUgcuGGCguugCCGCg -3'
miRNA:   3'- cguUCGCGCa--CCACCGGGA---CCG----GGUG- -5'
19067 5' -61.9 NC_004684.1 + 2144 0.69 0.254892
Target:  5'- uGCGuucGGCGCGUcGGUgaacucggcguugacGGUCaUGGCCCGCg -3'
miRNA:   3'- -CGU---UCGCGCA-CCA---------------CCGGgACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 40119 0.69 0.265062
Target:  5'- aGCGGGCGC-UGGcGGCCUcGGCaCCGa -3'
miRNA:   3'- -CGUUCGCGcACCaCCGGGaCCG-GGUg -5'
19067 5' -61.9 NC_004684.1 + 53669 0.68 0.29192
Target:  5'- cGCAGGCGCacacgGGUGGgCCggaacaccugguUGGCCgACc -3'
miRNA:   3'- -CGUUCGCGca---CCACCgGG------------ACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 9208 0.68 0.298959
Target:  5'- aGUggGCGCGUgaccgGGUGGgCCaGGaCCCGa -3'
miRNA:   3'- -CGuuCGCGCA-----CCACCgGGaCC-GGGUg -5'
19067 5' -61.9 NC_004684.1 + 10248 0.68 0.298959
Target:  5'- gGCcguGCGCGUGGagcgGGCCaaccaaCUGGCCaGCg -3'
miRNA:   3'- -CGuu-CGCGCACCa---CCGG------GACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 62242 0.68 0.306128
Target:  5'- gGguAGCGCG-GcUGGUCCUG-CCCGCu -3'
miRNA:   3'- -CguUCGCGCaCcACCGGGACcGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 64292 0.68 0.328423
Target:  5'- ---cGCGCGcaGUGcGCCCUGGCCguCg -3'
miRNA:   3'- cguuCGCGCacCAC-CGGGACCGGguG- -5'
19067 5' -61.9 NC_004684.1 + 11760 0.71 0.206679
Target:  5'- gGCAucuGGUucuccgGUGUGGUGGCCCcgugGGCCgACc -3'
miRNA:   3'- -CGU---UCG------CGCACCACCGGGa---CCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 27797 0.71 0.196426
Target:  5'- ---uGCGCGgcGGUucGGUCCUGGCCUGCu -3'
miRNA:   3'- cguuCGCGCa-CCA--CCGGGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 2831 0.71 0.18662
Target:  5'- cGCGGGUGgGUGGaUGaGCaCCUGGaCCACg -3'
miRNA:   3'- -CGUUCGCgCACC-AC-CG-GGACCgGGUG- -5'
19067 5' -61.9 NC_004684.1 + 22255 0.75 0.100803
Target:  5'- cGCAGGCGCGagcaugggaccgccUGGcggcGGCCaaGGCCCGCg -3'
miRNA:   3'- -CGUUCGCGC--------------ACCa---CCGGgaCCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 48979 0.74 0.110186
Target:  5'- gGCGGGCGCGUcGGU-GCCCUgcuggccgGGCCCGa -3'
miRNA:   3'- -CGUUCGCGCA-CCAcCGGGA--------CCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 13267 0.74 0.113187
Target:  5'- cGCcAGCGCGcUGGUGGCCgccgguggCUGGUgCGCg -3'
miRNA:   3'- -CGuUCGCGC-ACCACCGG--------GACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 36100 0.74 0.125972
Target:  5'- gGCAAGCGCGcggugGGUGcGCCUgcUGGCCUuCg -3'
miRNA:   3'- -CGUUCGCGCa----CCAC-CGGG--ACCGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 12075 0.73 0.14767
Target:  5'- cCGAGCGCGacGaGGUgCUGGCCCGCg -3'
miRNA:   3'- cGUUCGCGCacCaCCGgGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 14378 0.72 0.172721
Target:  5'- -aGAGCGCGcUGGUGGCgCUGGaCgACg -3'
miRNA:   3'- cgUUCGCGC-ACCACCGgGACCgGgUG- -5'
19067 5' -61.9 NC_004684.1 + 51452 0.71 0.181881
Target:  5'- aGCucauGCGCccGGUGGCCgaGGCCCcCa -3'
miRNA:   3'- -CGuu--CGCGcaCCACCGGgaCCGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 31114 0.71 0.186141
Target:  5'- cGCAGGCGC-UGGaggaccuUGGCgaCCUGGCgCACa -3'
miRNA:   3'- -CGUUCGCGcACC-------ACCG--GGACCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.