Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19068 | 3' | -54.1 | NC_004684.1 | + | 64799 | 0.66 | 0.825209 |
Target: 5'- cCGCgUCGGCGUAcucgGUCGGgucgGGCa-- -3' miRNA: 3'- -GCGgAGUUGCAUua--CAGCCa---CCGcgc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 64636 | 0.67 | 0.76695 |
Target: 5'- uGCCgUCGGCGUcguggcgcaccgcGAUGUCGGc-GCGCa -3' miRNA: 3'- gCGG-AGUUGCA-------------UUACAGCCacCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 63546 | 0.66 | 0.8513 |
Target: 5'- uGCCuUCggUGUGGUcGUCGGUcGGCaCGc -3' miRNA: 3'- gCGG-AGuuGCAUUA-CAGCCA-CCGcGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 62957 | 0.71 | 0.554701 |
Target: 5'- gCGCCgacgAugGUGgcGUGcUCGGUGGUGCGc -3' miRNA: 3'- -GCGGag--UugCAU--UAC-AGCCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 61176 | 0.66 | 0.834116 |
Target: 5'- gGCCaggUCGGCGgg--GUUGGUGGCcucgGCGu -3' miRNA: 3'- gCGG---AGUUGCauuaCAGCCACCG----CGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 60934 | 0.68 | 0.704736 |
Target: 5'- aCGCCUCGgccaguucgacauGCGUGcUGUacaccucguggcUGGUGGCGuCGg -3' miRNA: 3'- -GCGGAGU-------------UGCAUuACA------------GCCACCGC-GC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 60221 | 0.67 | 0.80681 |
Target: 5'- gGCCUCGGCGUuguaGGUGcacccgcaggCGGUGGC-Ca -3' miRNA: 3'- gCGGAGUUGCA----UUACa---------GCCACCGcGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 60130 | 0.69 | 0.651968 |
Target: 5'- uCGCCU-GGCGgccUGcUCGGUGGCGUa -3' miRNA: 3'- -GCGGAgUUGCauuAC-AGCCACCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 58885 | 0.67 | 0.767952 |
Target: 5'- gGCgUUGGCGaUGGUcUUGGUGGUGCGg -3' miRNA: 3'- gCGgAGUUGC-AUUAcAGCCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 58820 | 0.7 | 0.608515 |
Target: 5'- cCGCCUCgGAUGUccggGAUGaugCGGUcGGCGCa -3' miRNA: 3'- -GCGGAG-UUGCA----UUACa--GCCA-CCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 55781 | 0.66 | 0.815182 |
Target: 5'- aGCCUucgauggCGGCGUGAccgggugGUcCGGUGaGCGCGu -3' miRNA: 3'- gCGGA-------GUUGCAUUa------CA-GCCAC-CGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 54848 | 0.74 | 0.405102 |
Target: 5'- gCGCCUgGagcGCGUcGAUGUCGGUGG-GCa -3' miRNA: 3'- -GCGGAgU---UGCA-UUACAGCCACCgCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 53508 | 0.67 | 0.80587 |
Target: 5'- uCGCCUUggUGUcgacacccuccugAAUGgccaGGUcGGCGCGg -3' miRNA: 3'- -GCGGAGuuGCA-------------UUACag--CCA-CCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 51546 | 0.69 | 0.684403 |
Target: 5'- uGaCCUCGGCGUGc-GUCGGUGuggcgaugccGCGCGc -3' miRNA: 3'- gC-GGAGUUGCAUuaCAGCCAC----------CGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 49530 | 0.72 | 0.502371 |
Target: 5'- gCGCUcaggCGGCGUGcgGUCGGUGaCGCa -3' miRNA: 3'- -GCGGa---GUUGCAUuaCAGCCACcGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 49524 | 0.7 | 0.630238 |
Target: 5'- gGCC-CAGCGUGcacccggCGGUGuGCGCGg -3' miRNA: 3'- gCGGaGUUGCAUuaca---GCCAC-CGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 48937 | 0.66 | 0.815182 |
Target: 5'- gGCCUCGucgccgaACGgcAcGUCGGcgGGCGgGg -3' miRNA: 3'- gCGGAGU-------UGCauUaCAGCCa-CCGCgC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 47680 | 0.7 | 0.629151 |
Target: 5'- gCGCCUUcuugucgAAgGUGAUGcUGGuUGGCGCGg -3' miRNA: 3'- -GCGGAG-------UUgCAUUACaGCC-ACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 46676 | 0.72 | 0.492156 |
Target: 5'- uGCgUUGGCGUugcGGUGgcggugCGGUGGCGCGc -3' miRNA: 3'- gCGgAGUUGCA---UUACa-----GCCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 44408 | 0.66 | 0.825209 |
Target: 5'- gGCCguugaUCAGCGguucGAUGgCGGcguUGGCGCGc -3' miRNA: 3'- gCGG-----AGUUGCa---UUACaGCC---ACCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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