miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 62938 0.75 0.272114
Target:  5'- gCCGaCCAGCGCGCGGCGCGcGCCgACGa -3'
miRNA:   3'- aGGCcGGUUGCGCGUUGUGU-UGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 6629 0.75 0.289005
Target:  5'- cCUGGCCAgggccgugcucccugACGUGCAGCGCGgugucgacauGCCACGg -3'
miRNA:   3'- aGGCCGGU---------------UGCGCGUUGUGU----------UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17854 0.75 0.303701
Target:  5'- gUCGGCCAcCGCGCAcaccgccgggugcacGCugGGCCGCu -3'
miRNA:   3'- aGGCCGGUuGCGCGU---------------UGugUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 51562 0.74 0.323655
Target:  5'- cUCUGcGCCAguGCGCGCuGCGCGGCgGCGa -3'
miRNA:   3'- -AGGC-CGGU--UGCGCGuUGUGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 37356 0.74 0.323655
Target:  5'- aCCGGCgAGCGCGCGuucacGCuCAGCCAgGa -3'
miRNA:   3'- aGGCCGgUUGCGCGU-----UGuGUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 10496 0.74 0.331586
Target:  5'- cCCGGCCGACGC---ACugGGCCGCc -3'
miRNA:   3'- aGGCCGGUUGCGcguUGugUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 25611 0.74 0.331586
Target:  5'- gCCGGgCAcauGCGCGCGACGCuGCC-CAa -3'
miRNA:   3'- aGGCCgGU---UGCGCGUUGUGuUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 21291 0.74 0.331586
Target:  5'- cCCGGCCGuaucUGCGCAACGCAGgCGa- -3'
miRNA:   3'- aGGCCGGUu---GCGCGUUGUGUUgGUgu -5'
19071 5' -54.9 NC_004684.1 + 61001 0.74 0.337221
Target:  5'- cUCGGCCAACuucgccaacacgcuGCGCAACGCGcagGCCAUc -3'
miRNA:   3'- aGGCCGGUUG--------------CGCGUUGUGU---UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 40069 0.74 0.339658
Target:  5'- gUUGGUCAGCGUGCGGuCGCAgauACCGCAg -3'
miRNA:   3'- aGGCCGGUUGCGCGUU-GUGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 45643 0.74 0.339658
Target:  5'- --aGGCgCAGCGCGCGGC-CGACCAUc -3'
miRNA:   3'- aggCCG-GUUGCGCGUUGuGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 539 0.74 0.339658
Target:  5'- gCUGGCCAGCGCGguCGAgGCcGCCACc -3'
miRNA:   3'- aGGCCGGUUGCGC--GUUgUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 7317 0.74 0.347872
Target:  5'- cCCGGCCAugGC-CGACGCGugCuCGg -3'
miRNA:   3'- aGGCCGGUugCGcGUUGUGUugGuGU- -5'
19071 5' -54.9 NC_004684.1 + 57167 0.73 0.355385
Target:  5'- -gUGGCCGACGCGCAcgcucggGCGCAggcggGCCugGa -3'
miRNA:   3'- agGCCGGUUGCGCGU-------UGUGU-----UGGugU- -5'
19071 5' -54.9 NC_004684.1 + 65778 0.73 0.356227
Target:  5'- gCCGGUgGGCGCGCG-CACGGCgACc -3'
miRNA:   3'- aGGCCGgUUGCGCGUuGUGUUGgUGu -5'
19071 5' -54.9 NC_004684.1 + 28261 0.73 0.356227
Target:  5'- cCCGGCCAGCcUGguGCGCGagGCCGCu -3'
miRNA:   3'- aGGCCGGUUGcGCguUGUGU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 15794 0.73 0.364722
Target:  5'- aCCGG-CAACGUGC-ACACcACCACGc -3'
miRNA:   3'- aGGCCgGUUGCGCGuUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 63374 0.73 0.364722
Target:  5'- -gCGGCCGACGCGCcAGC-CGAUgGCGg -3'
miRNA:   3'- agGCCGGUUGCGCG-UUGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 61211 0.73 0.364722
Target:  5'- cCUGGCCGuuCGCGuCGGCGauCAGCCACAc -3'
miRNA:   3'- aGGCCGGUu-GCGC-GUUGU--GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 17785 0.73 0.364722
Target:  5'- aCCGGCCAGC-CGCAACGacGCCuGCGg -3'
miRNA:   3'- aGGCCGGUUGcGCGUUGUguUGG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.