Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19075 | 3' | -57.4 | NC_004684.1 | + | 23987 | 0.66 | 0.662102 |
Target: 5'- -gGUUCGGCGGCGGCGacccGUUCuccggGCCGUc -3' miRNA: 3'- uaCAGGCCGCUGCUGCc---UAAG-----CGGUA- -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 31395 | 0.66 | 0.662102 |
Target: 5'- cUGUCCGGCGGgcaccacccCGACuGug-CGCCAg -3' miRNA: 3'- uACAGGCCGCU---------GCUGcCuaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 26595 | 0.66 | 0.662102 |
Target: 5'- uUGUaCGGCGG-GACGGAccCGCCAc -3' miRNA: 3'- uACAgGCCGCUgCUGCCUaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 8926 | 0.66 | 0.640565 |
Target: 5'- ---aUCGGCGACGA-GGAUgugCGCCu- -3' miRNA: 3'- uacaGGCCGCUGCUgCCUAa--GCGGua -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 35659 | 0.66 | 0.640565 |
Target: 5'- -aGggCCGuCGGCGGCGGugugUCGCCAc -3' miRNA: 3'- uaCa-GGCcGCUGCUGCCua--AGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 53722 | 0.66 | 0.629781 |
Target: 5'- gAUGUCCGGC-AUGGugcCGGGUUCgacgGCCAg -3' miRNA: 3'- -UACAGGCCGcUGCU---GCCUAAG----CGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 58318 | 0.66 | 0.629781 |
Target: 5'- ---aCCGGCGACGcCGGGUcauggcgCGCCc- -3' miRNA: 3'- uacaGGCCGCUGCuGCCUAa------GCGGua -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 61487 | 0.67 | 0.597476 |
Target: 5'- gAUGUCgccgcgcaGGCGGCGGCGcucGAUgcgCGCCAg -3' miRNA: 3'- -UACAGg-------CCGCUGCUGC---CUAa--GCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 5989 | 0.67 | 0.597476 |
Target: 5'- cAUGUaCGGCGG-GACGGAccCGCCAc -3' miRNA: 3'- -UACAgGCCGCUgCUGCCUaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 51700 | 0.67 | 0.597476 |
Target: 5'- gAUG-CCGGUGGCGuCGGugcCGCCGc -3' miRNA: 3'- -UACaGGCCGCUGCuGCCuaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 18647 | 0.67 | 0.597476 |
Target: 5'- cUGcCCGGUGACGACGuGAccaucgUGCCGc -3' miRNA: 3'- uACaGGCCGCUGCUGC-CUaa----GCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 39438 | 0.67 | 0.576066 |
Target: 5'- cUGUUCGGCGACGuaccACGG---UGCCAg -3' miRNA: 3'- uACAGGCCGCUGC----UGCCuaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 63344 | 0.67 | 0.576066 |
Target: 5'- ---cCCGGCGAUGGcCGGuaggccaccgUCGCCAUg -3' miRNA: 3'- uacaGGCCGCUGCU-GCCua--------AGCGGUA- -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 27319 | 0.67 | 0.565423 |
Target: 5'- -gGUgCGGCcagcuuugacGACGGCGGuaUCGCCGUg -3' miRNA: 3'- uaCAgGCCG----------CUGCUGCCuaAGCGGUA- -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 22353 | 0.67 | 0.554833 |
Target: 5'- gGUGg-CGGCGGCGGCGGcggUCGCg-- -3' miRNA: 3'- -UACagGCCGCUGCUGCCua-AGCGgua -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 15826 | 0.67 | 0.544301 |
Target: 5'- ---cCCGGUGGCGcGCGGcaUCGCCAc -3' miRNA: 3'- uacaGGCCGCUGC-UGCCuaAGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 2212 | 0.68 | 0.533835 |
Target: 5'- cGUGUaCGGCGG-GACGGAccCGCCAg -3' miRNA: 3'- -UACAgGCCGCUgCUGCCUaaGCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 23213 | 0.68 | 0.533835 |
Target: 5'- gGUG-CUGGCGcGCGcCGGGUucaUCGCCGUg -3' miRNA: 3'- -UACaGGCCGC-UGCuGCCUA---AGCGGUA- -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 60736 | 0.68 | 0.523442 |
Target: 5'- gGUGcCCGGCGAC--CGGGUggcCGCCGg -3' miRNA: 3'- -UACaGGCCGCUGcuGCCUAa--GCGGUa -5' |
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19075 | 3' | -57.4 | NC_004684.1 | + | 25301 | 0.68 | 0.513127 |
Target: 5'- ---aCCaGGCGGCGGCGG-UUCGUCGg -3' miRNA: 3'- uacaGG-CCGCUGCUGCCuAAGCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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