miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19075 5' -56.9 NC_004684.1 + 45233 0.66 0.725923
Target:  5'- gCUugGUGCUGGUCaggcccggcagccagCGCUGgucgcggcCCUUGCg -3'
miRNA:   3'- -GAugCACGACUAGg--------------GCGGCa-------GGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 39198 0.66 0.724895
Target:  5'- -gGCgGUGCUG-UCCaCGUgCG-CCUCGCg -3'
miRNA:   3'- gaUG-CACGACuAGG-GCG-GCaGGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 60203 0.66 0.714568
Target:  5'- -gAUGUGCUGAUCggCGuuGgCCUCGg -3'
miRNA:   3'- gaUGCACGACUAGg-GCggCaGGAGCg -5'
19075 5' -56.9 NC_004684.1 + 50433 0.66 0.714568
Target:  5'- -cAgGUGCaGG-CCCGCCuugcaggCCUCGCg -3'
miRNA:   3'- gaUgCACGaCUaGGGCGGca-----GGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 32162 0.66 0.711454
Target:  5'- -gACGUGUcgaacacgaacaacUGGUCCuCGCCGUCgUUccaGCa -3'
miRNA:   3'- gaUGCACG--------------ACUAGG-GCGGCAGgAG---CG- -5'
19075 5' -56.9 NC_004684.1 + 51491 0.66 0.704165
Target:  5'- cCUGCGgaugGCaccgcccGGUCaCCGCCG-CCUgGCg -3'
miRNA:   3'- -GAUGCa---CGa------CUAG-GGCGGCaGGAgCG- -5'
19075 5' -56.9 NC_004684.1 + 7332 0.66 0.704165
Target:  5'- -cGCGUGCUcGGUgugcaaCCCGCCGgug-CGCg -3'
miRNA:   3'- gaUGCACGA-CUA------GGGCGGCaggaGCG- -5'
19075 5' -56.9 NC_004684.1 + 48916 0.66 0.704165
Target:  5'- -cACGUGCgGGUCCgcagGCCcggCCUCGUc -3'
miRNA:   3'- gaUGCACGaCUAGGg---CGGca-GGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 56658 0.66 0.693696
Target:  5'- uUGCGccGCUcGAUCUCGUCGgCCUgGCu -3'
miRNA:   3'- gAUGCa-CGA-CUAGGGCGGCaGGAgCG- -5'
19075 5' -56.9 NC_004684.1 + 29051 0.66 0.693696
Target:  5'- gCUugG-GCgUGGUCaCCGCCuuGUCCUUGa -3'
miRNA:   3'- -GAugCaCG-ACUAG-GGCGG--CAGGAGCg -5'
19075 5' -56.9 NC_004684.1 + 1411 0.66 0.6726
Target:  5'- gUACGggcgGCUGAgccugcgcgaCCCGCUGUCCacgaaggUGCa -3'
miRNA:   3'- gAUGCa---CGACUa---------GGGCGGCAGGa------GCG- -5'
19075 5' -56.9 NC_004684.1 + 55782 0.66 0.6726
Target:  5'- -gACGgccaGCUcGGUgCCGUCGUCCaggCGCa -3'
miRNA:   3'- gaUGCa---CGA-CUAgGGCGGCAGGa--GCG- -5'
19075 5' -56.9 NC_004684.1 + 8724 0.67 0.661994
Target:  5'- -gGCGgcGCUGAUCCCGauGUUCgccgcCGCg -3'
miRNA:   3'- gaUGCa-CGACUAGGGCggCAGGa----GCG- -5'
19075 5' -56.9 NC_004684.1 + 45289 0.67 0.640713
Target:  5'- -gGCGcUGCUGGUUCgCGCUGUCgUUGg -3'
miRNA:   3'- gaUGC-ACGACUAGG-GCGGCAGgAGCg -5'
19075 5' -56.9 NC_004684.1 + 64410 0.67 0.619402
Target:  5'- -aAgGUGCgccgCCCGCCGUCCaggGCa -3'
miRNA:   3'- gaUgCACGacuaGGGCGGCAGGag-CG- -5'
19075 5' -56.9 NC_004684.1 + 55147 0.67 0.619402
Target:  5'- gUACGUGaccgGAUCgCCGCCGUCgg-GCg -3'
miRNA:   3'- gAUGCACga--CUAG-GGCGGCAGgagCG- -5'
19075 5' -56.9 NC_004684.1 + 54564 0.68 0.608758
Target:  5'- -cACGUcggcaGCaGAg-CCGCCGUCCUCGg -3'
miRNA:   3'- gaUGCA-----CGaCUagGGCGGCAGGAGCg -5'
19075 5' -56.9 NC_004684.1 + 58897 0.68 0.608758
Target:  5'- -cACG-GCaccGUCUCGCCGUCCcCGCc -3'
miRNA:   3'- gaUGCaCGac-UAGGGCGGCAGGaGCG- -5'
19075 5' -56.9 NC_004684.1 + 66899 0.68 0.598133
Target:  5'- -aGCGUGUcguugucGGUgCUGCCGaCCUCGCu -3'
miRNA:   3'- gaUGCACGa------CUAgGGCGGCaGGAGCG- -5'
19075 5' -56.9 NC_004684.1 + 46069 0.68 0.598133
Target:  5'- aUGCG-GC-GGUCgCGCCGgaccaccgCCUCGCc -3'
miRNA:   3'- gAUGCaCGaCUAGgGCGGCa-------GGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.