miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 3' -63.1 NC_004684.1 + 47221 0.66 0.399315
Target:  5'- aCGUGCGCgUcGaACGccgcaaGGGCCGGGCc- -3'
miRNA:   3'- aGCACGCGgAcC-UGC------UCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 24510 0.66 0.399315
Target:  5'- cUCG-GUGCCa----GAGGCCGGGCg- -3'
miRNA:   3'- -AGCaCGCGGaccugCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 62784 0.66 0.390782
Target:  5'- gUUG-GUGCCUGcccGGCGGGguuGCCGGGCa- -3'
miRNA:   3'- -AGCaCGCGGAC---CUGCUC---CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 25063 0.66 0.390782
Target:  5'- -gGUG-GCCaGGGC--GGCCGGGUUGg -3'
miRNA:   3'- agCACgCGGaCCUGcuCCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 17540 0.66 0.385719
Target:  5'- aCGUGgucgccuaccaggacCGCCUGGACGAGGUgCGcGCa- -3'
miRNA:   3'- aGCAC---------------GCGGACCUGCUCCG-GCcCGac -5'
19076 3' -63.1 NC_004684.1 + 56044 0.66 0.382369
Target:  5'- cCGUGgGCCUGGAgGccGCCGucaaGGCg- -3'
miRNA:   3'- aGCACgCGGACCUgCucCGGC----CCGac -5'
19076 3' -63.1 NC_004684.1 + 27701 0.66 0.382369
Target:  5'- --uUGCgGCCUGGugGAaagcgaauacGGCCcGGGCa- -3'
miRNA:   3'- agcACG-CGGACCugCU----------CCGG-CCCGac -5'
19076 3' -63.1 NC_004684.1 + 18371 0.66 0.382369
Target:  5'- --cUGCGCCggUGGccgaucuguucaGCGGGGUCGGGCc- -3'
miRNA:   3'- agcACGCGG--ACC------------UGCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 15501 0.66 0.382369
Target:  5'- ---aGUuCCUGGAcaaggccgccCGGGGCCGGGCg- -3'
miRNA:   3'- agcaCGcGGACCU----------GCUCCGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 23555 0.66 0.374076
Target:  5'- aUCGgucGCgGCCUGGAC-AGccuGCCGGGCc- -3'
miRNA:   3'- -AGCa--CG-CGGACCUGcUC---CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 23771 0.66 0.365907
Target:  5'- ---cGCGCUcGGccacacCGuGGCCGGGCUGu -3'
miRNA:   3'- agcaCGCGGaCCu-----GCuCCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 5791 0.66 0.365907
Target:  5'- --cUGCGCCaGGcguGCGAGGUCGGGaCg- -3'
miRNA:   3'- agcACGCGGaCC---UGCUCCGGCCC-Gac -5'
19076 3' -63.1 NC_004684.1 + 54370 0.67 0.349941
Target:  5'- ---aGUGCCggGGGCGGGGUCGaGGCc- -3'
miRNA:   3'- agcaCGCGGa-CCUGCUCCGGC-CCGac -5'
19076 3' -63.1 NC_004684.1 + 63263 0.67 0.349941
Target:  5'- cCGaUGCGCucCUGGACcugGAGccGCCGGGCg- -3'
miRNA:   3'- aGC-ACGCG--GACCUG---CUC--CGGCCCGac -5'
19076 3' -63.1 NC_004684.1 + 13734 0.67 0.349156
Target:  5'- gUGUGCGCCUGcgcuucaccGACGGGGUgcuccagcgcaugCGGGUg- -3'
miRNA:   3'- aGCACGCGGAC---------CUGCUCCG-------------GCCCGac -5'
19076 3' -63.1 NC_004684.1 + 19547 0.67 0.342146
Target:  5'- -gGUGCGCC-GGGCGgugccAGGucuCCGGGcCUGg -3'
miRNA:   3'- agCACGCGGaCCUGC-----UCC---GGCCC-GAC- -5'
19076 3' -63.1 NC_004684.1 + 65461 0.67 0.342146
Target:  5'- cCGUGCGCC-GGuACcAGGCCcGGCa- -3'
miRNA:   3'- aGCACGCGGaCC-UGcUCCGGcCCGac -5'
19076 3' -63.1 NC_004684.1 + 28262 0.67 0.334477
Target:  5'- cCG-GCcaGCCUGGugcGCGAGGCCGcuGGCg- -3'
miRNA:   3'- aGCaCG--CGGACC---UGCUCCGGC--CCGac -5'
19076 3' -63.1 NC_004684.1 + 17758 0.67 0.305069
Target:  5'- -gGUGCuCCUGGA-GccGCUGGGCUGg -3'
miRNA:   3'- agCACGcGGACCUgCucCGGCCCGAC- -5'
19076 3' -63.1 NC_004684.1 + 41618 0.68 0.298034
Target:  5'- gCGUGcCGCCgguggagccGGACGccAGGCCGGGg-- -3'
miRNA:   3'- aGCAC-GCGGa--------CCUGC--UCCGGCCCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.