miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19078 3' -58.8 NC_004684.1 + 16067 1.11 0.000474
Target:  5'- aCGAUGGCGCUGAUGGCCGGUGACCGGg -3'
miRNA:   3'- -GCUACCGCGACUACCGGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 35401 0.69 0.442067
Target:  5'- uCGGUGGCGgcCUGcgGGUagaucagcgcggaggUGGUGAUCGGc -3'
miRNA:   3'- -GCUACCGC--GACuaCCG---------------GCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 2043 0.69 0.457068
Target:  5'- uGGUGGCcCUGggGGCCGccaucGUGGCCu- -3'
miRNA:   3'- gCUACCGcGACuaCCGGC-----CACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 36581 0.66 0.62917
Target:  5'- cCGGuUGGUGCccGAcGGCaCGGUGuagguGCCGGa -3'
miRNA:   3'- -GCU-ACCGCGa-CUaCCG-GCCAC-----UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 61395 0.73 0.265062
Target:  5'- cCGAUGGUGCgccUGAgccaGGCCGGgacuucgcucGGCCGGu -3'
miRNA:   3'- -GCUACCGCG---ACUa---CCGGCCa---------CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 44970 0.72 0.278233
Target:  5'- gCGAUGGCGUUGA-GGCCcagcgGGCUGGu -3'
miRNA:   3'- -GCUACCGCGACUaCCGGcca--CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 42518 0.71 0.32614
Target:  5'- aCGAUGGCGCggcuUGAUGGgggugccgaacggcCCGGUGGCg-- -3'
miRNA:   3'- -GCUACCGCG----ACUACC--------------GGCCACUGgcc -5'
19078 3' -58.8 NC_004684.1 + 37317 0.71 0.336116
Target:  5'- ---cGGCGUcggUGAgUGGCCGGgaGGCCGGu -3'
miRNA:   3'- gcuaCCGCG---ACU-ACCGGCCa-CUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 5675 0.7 0.368192
Target:  5'- -cGUGGuCGgaGGUGGCCGG-GGCCcGGc -3'
miRNA:   3'- gcUACC-GCgaCUACCGGCCaCUGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 15404 0.69 0.4201
Target:  5'- cCGGcagGGCGC-GAUGGCCGacaccGUGGCCa- -3'
miRNA:   3'- -GCUa--CCGCGaCUACCGGC-----CACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 714 0.69 0.411143
Target:  5'- gGGUGGgaagacCUGGgcaccGCCGGUGACCGGg -3'
miRNA:   3'- gCUACCgc----GACUac---CGGCCACUGGCC- -5'
19078 3' -58.8 NC_004684.1 + 62484 0.7 0.368192
Target:  5'- uGAUGGUGCcgccGA-GGCCGGUGGCg-- -3'
miRNA:   3'- gCUACCGCGa---CUaCCGGCCACUGgcc -5'
19078 3' -58.8 NC_004684.1 + 58572 0.77 0.140083
Target:  5'- gCGAUGGCGUcguugcgggucuUGAUGGCaaccuCGGUGACCuGGu -3'
miRNA:   3'- -GCUACCGCG------------ACUACCG-----GCCACUGG-CC- -5'
19078 3' -58.8 NC_004684.1 + 58758 0.69 0.411143
Target:  5'- gCGggGGUGCcGAggaucggcgGuGCCGGUGcACCGGg -3'
miRNA:   3'- -GCuaCCGCGaCUa--------C-CGGCCAC-UGGCC- -5'
19078 3' -58.8 NC_004684.1 + 45878 0.77 0.14767
Target:  5'- uGGUGGUGUcGAUGGCCGGUG-CCu- -3'
miRNA:   3'- gCUACCGCGaCUACCGGCCACuGGcc -5'
19078 3' -58.8 NC_004684.1 + 5181 0.7 0.359979
Target:  5'- aGGUGGCGCUGGuUGGCCaG-GACgGc -3'
miRNA:   3'- gCUACCGCGACU-ACCGGcCaCUGgCc -5'
19078 3' -58.8 NC_004684.1 + 46595 0.69 0.4201
Target:  5'- gCGGcUGGCGUUGcguGCCGGUGGCuuCGGg -3'
miRNA:   3'- -GCU-ACCGCGACuacCGGCCACUG--GCC- -5'
19078 3' -58.8 NC_004684.1 + 21385 0.69 0.44766
Target:  5'- aCGAcGuGCGCaccGUGGCCGGUGACUu- -3'
miRNA:   3'- -GCUaC-CGCGac-UACCGGCCACUGGcc -5'
19078 3' -58.8 NC_004684.1 + 63134 0.75 0.191468
Target:  5'- gCGAUGGUGgUGGUGGCCGa-GugCGGc -3'
miRNA:   3'- -GCUACCGCgACUACCGGCcaCugGCC- -5'
19078 3' -58.8 NC_004684.1 + 65663 0.72 0.306128
Target:  5'- uCGGUGGUGgUGAggucgcggcacUGGCCGGUGccuGCCaGGu -3'
miRNA:   3'- -GCUACCGCgACU-----------ACCGGCCAC---UGG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.