miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 28180 0.66 0.629045
Target:  5'- gUGCaaccuGCGCGAGGCGCacgUGGAcagcaccgccaGCCUGCg -3'
miRNA:   3'- -ACGg----UGCGUUCUGUG---ACCUc----------CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 65405 0.66 0.644206
Target:  5'- cUGCCagaacgcgaguucgcGCGCcAGGCGCUGcgcuGGCgUGCg -3'
miRNA:   3'- -ACGG---------------UGCGuUCUGUGACcu--CCGgACG- -5'
19079 3' -57.2 NC_004684.1 + 25015 0.66 0.639875
Target:  5'- cGCUcaGCGCcGGugcaGCUGGAGGCg-GCa -3'
miRNA:   3'- aCGG--UGCGuUCug--UGACCUCCGgaCG- -5'
19079 3' -57.2 NC_004684.1 + 51821 0.66 0.629045
Target:  5'- gGCCGCGCGcGcuGCGCUGGAGcaucaCCcagUGCg -3'
miRNA:   3'- aCGGUGCGUuC--UGUGACCUCc----GG---ACG- -5'
19079 3' -57.2 NC_004684.1 + 40013 0.66 0.607401
Target:  5'- aGCaCGCGCuccGGCGCgaUGGuGGCCUuggGCa -3'
miRNA:   3'- aCG-GUGCGuu-CUGUG--ACCuCCGGA---CG- -5'
19079 3' -57.2 NC_004684.1 + 21176 0.66 0.607401
Target:  5'- cGCCACGUucGAGGaACUGGGcGGCUauacGCa -3'
miRNA:   3'- aCGGUGCG--UUCUgUGACCU-CCGGa---CG- -5'
19079 3' -57.2 NC_004684.1 + 65813 0.66 0.639875
Target:  5'- -aCCGgGCAGGugACccGGAGGCaccgGCg -3'
miRNA:   3'- acGGUgCGUUCugUGa-CCUCCGga--CG- -5'
19079 3' -57.2 NC_004684.1 + 54897 0.66 0.639875
Target:  5'- gUGCgGCaCGAGGCGgccCUGGuGGCCgaGCg -3'
miRNA:   3'- -ACGgUGcGUUCUGU---GACCuCCGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 36228 0.66 0.618217
Target:  5'- gGCCAcCGcCGAGAcCGCUGGcguGGCCa-- -3'
miRNA:   3'- aCGGU-GC-GUUCU-GUGACCu--CCGGacg -5'
19079 3' -57.2 NC_004684.1 + 59132 0.66 0.646371
Target:  5'- cGCgGCGCAcguggcgGGACugcauguugucggcGCUGGu-GCCUGCg -3'
miRNA:   3'- aCGgUGCGU-------UCUG--------------UGACCucCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 45110 0.66 0.661506
Target:  5'- cGCCGCGC-GGGCcUUGGccGCCgccagGCg -3'
miRNA:   3'- aCGGUGCGuUCUGuGACCucCGGa----CG- -5'
19079 3' -57.2 NC_004684.1 + 13258 0.66 0.629045
Target:  5'- gGCCGugacCGCcAGcGCGCUGGuGGCC-GCc -3'
miRNA:   3'- aCGGU----GCGuUC-UGUGACCuCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 54639 0.66 0.607401
Target:  5'- aGCCGCGCGGGcCAagaGGGcgucgaccucGGCCUGg -3'
miRNA:   3'- aCGGUGCGUUCuGUga-CCU----------CCGGACg -5'
19079 3' -57.2 NC_004684.1 + 4518 0.66 0.60416
Target:  5'- gGCCgggauccuguuccgGgGCGAGACcCcGGAGGCCcGCu -3'
miRNA:   3'- aCGG--------------UgCGUUCUGuGaCCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 34731 0.66 0.618217
Target:  5'- cGUCugGCAcgucgucguGGACGaguagGGAGGCC-GCc -3'
miRNA:   3'- aCGGugCGU---------UCUGUga---CCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 45226 0.66 0.618217
Target:  5'- aUGCgGCGCuuGGUGCUGGucAGGCCcgGCa -3'
miRNA:   3'- -ACGgUGCGuuCUGUGACC--UCCGGa-CG- -5'
19079 3' -57.2 NC_004684.1 + 37723 0.66 0.618217
Target:  5'- cGCC-CgGCGAGG---UGGAGcGCCUGCu -3'
miRNA:   3'- aCGGuG-CGUUCUgugACCUC-CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 14654 0.66 0.607401
Target:  5'- gGCCACGac-GAC-CUGGAGGaCaGCg -3'
miRNA:   3'- aCGGUGCguuCUGuGACCUCCgGaCG- -5'
19079 3' -57.2 NC_004684.1 + 11684 0.66 0.617135
Target:  5'- cGCCGCGCAAGcagcugcGCACUacgacaacgcuGAcGCCUGCu -3'
miRNA:   3'- aCGGUGCGUUC-------UGUGAc----------CUcCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 6596 0.66 0.607401
Target:  5'- cGCCACGCAccgAGGCGaguucCUGGucGCCa-- -3'
miRNA:   3'- aCGGUGCGU---UCUGU-----GACCucCGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.