miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 4422 0.7 0.413969
Target:  5'- cGCCggaacaacGCGCGGGccugcuggcGCAgCUGGAGGCC-GCa -3'
miRNA:   3'- aCGG--------UGCGUUC---------UGU-GACCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 14070 0.71 0.344424
Target:  5'- cGCCAUGCAGaacgugaucGAC-CUGGGGGUCaUGUa -3'
miRNA:   3'- aCGGUGCGUU---------CUGuGACCUCCGG-ACG- -5'
19079 3' -57.2 NC_004684.1 + 12869 0.71 0.344424
Target:  5'- cGCCAcCGcCGAGGCcgccGCcGGGGaGCCUGCg -3'
miRNA:   3'- aCGGU-GC-GUUCUG----UGaCCUC-CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 521 0.71 0.352643
Target:  5'- aGCUGCuGCAAGGC-CUGGAcccggcgaaaGGCCUGg -3'
miRNA:   3'- aCGGUG-CGUUCUGuGACCU----------CCGGACg -5'
19079 3' -57.2 NC_004684.1 + 3263 0.71 0.352643
Target:  5'- gGCCugGCcGGACAUcgUGGAcGCaCUGCu -3'
miRNA:   3'- aCGGugCGuUCUGUG--ACCUcCG-GACG- -5'
19079 3' -57.2 NC_004684.1 + 35879 0.71 0.369494
Target:  5'- cGUCAUGCAGGACACguucGGcGGUCgcgGCc -3'
miRNA:   3'- aCGGUGCGUUCUGUGa---CCuCCGGa--CG- -5'
19079 3' -57.2 NC_004684.1 + 66596 0.71 0.369494
Target:  5'- cGUCGCGCAcGAC-CUGGuucuuGGCCaGCu -3'
miRNA:   3'- aCGGUGCGUuCUGuGACCu----CCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 5561 0.7 0.375521
Target:  5'- uUGCCcucACGguGGGCGCgcgcgaaaucgccaUGGAGGCCUucGCc -3'
miRNA:   3'- -ACGG---UGCguUCUGUG--------------ACCUCCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 19777 0.7 0.378124
Target:  5'- gUGCC-CGCcgGGGGCGacaagaUGGcGGGCCUGCu -3'
miRNA:   3'- -ACGGuGCG--UUCUGUg-----ACC-UCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 52722 0.71 0.341985
Target:  5'- cGCCACGCucguAGGCGCUGuccuccaggucgucGuGGCCgcugGCg -3'
miRNA:   3'- aCGGUGCGu---UCUGUGAC--------------CuCCGGa---CG- -5'
19079 3' -57.2 NC_004684.1 + 57175 0.72 0.320601
Target:  5'- cGCgCACGCucGGGCGCaGGcGGGCCUGg -3'
miRNA:   3'- aCG-GUGCGu-UCUGUGaCC-UCCGGACg -5'
19079 3' -57.2 NC_004684.1 + 56060 0.72 0.305416
Target:  5'- cGCCgucaagGCGCAAGGCG-UGGAGGUgCUGUg -3'
miRNA:   3'- aCGG------UGCGUUCUGUgACCUCCG-GACG- -5'
19079 3' -57.2 NC_004684.1 + 40633 0.79 0.10326
Target:  5'- cGCCGCGCGGccGACGaacUUGGGGGCCUGg -3'
miRNA:   3'- aCGGUGCGUU--CUGU---GACCUCCGGACg -5'
19079 3' -57.2 NC_004684.1 + 10204 0.78 0.118627
Target:  5'- cGCCA-GCGAG-CGCUGGAGguGCCUGCc -3'
miRNA:   3'- aCGGUgCGUUCuGUGACCUC--CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 46489 0.78 0.118627
Target:  5'- cGCUGCGguAGGCGUUGGAGGCCaGCu -3'
miRNA:   3'- aCGGUGCguUCUGUGACCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 15514 0.77 0.147695
Target:  5'- gGCCGCccgggGCcGGGCGCUGGAGGCgCUGa -3'
miRNA:   3'- aCGGUG-----CGuUCUGUGACCUCCG-GACg -5'
19079 3' -57.2 NC_004684.1 + 62306 0.74 0.238372
Target:  5'- cGCCGCGCGGGccuccgcgaucucauCGCcGGAGGCCUccaGCa -3'
miRNA:   3'- aCGGUGCGUUCu--------------GUGaCCUCCGGA---CG- -5'
19079 3' -57.2 NC_004684.1 + 58378 0.74 0.24392
Target:  5'- cGCCcCGCAcGGCACcgcgcgUGGAGGCCUugGCc -3'
miRNA:   3'- aCGGuGCGUuCUGUG------ACCUCCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 28089 0.73 0.279486
Target:  5'- cGCCGCGCGAcccgcaccggguGGugcgguucgaggccuUGCUGGuGGCCUGCa -3'
miRNA:   3'- aCGGUGCGUU------------CU---------------GUGACCuCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 22703 0.72 0.298033
Target:  5'- gGCgGCGCAGGACG-UGGccaAGGCCgugGCu -3'
miRNA:   3'- aCGgUGCGUUCUGUgACC---UCCGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.