miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 3' -57.2 NC_004684.1 + 15258 1.12 0.000443
Target:  5'- cUGCCACGCAAGACACUGGAGGCCUGCg -3'
miRNA:   3'- -ACGGUGCGUUCUGUGACCUCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 31109 0.86 0.036003
Target:  5'- cGCCGCGC-AGGCGCUGGAGGaCCUugGCg -3'
miRNA:   3'- aCGGUGCGuUCUGUGACCUCC-GGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 40633 0.79 0.10326
Target:  5'- cGCCGCGCGGccGACGaacUUGGGGGCCUGg -3'
miRNA:   3'- aCGGUGCGUU--CUGU---GACCUCCGGACg -5'
19079 3' -57.2 NC_004684.1 + 3894 0.79 0.10326
Target:  5'- cGCCcugcugGCGCAGGcGCAgCUGGAGGCCUcGCg -3'
miRNA:   3'- aCGG------UGCGUUC-UGU-GACCUCCGGA-CG- -5'
19079 3' -57.2 NC_004684.1 + 7360 0.79 0.106175
Target:  5'- gGCCugGC-AGAUGCUGGAGacgagaccccccGCCUGCg -3'
miRNA:   3'- aCGGugCGuUCUGUGACCUC------------CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 10204 0.78 0.118627
Target:  5'- cGCCA-GCGAG-CGCUGGAGguGCCUGCc -3'
miRNA:   3'- aCGGUgCGUUCuGUGACCUC--CGGACG- -5'
19079 3' -57.2 NC_004684.1 + 46489 0.78 0.118627
Target:  5'- cGCUGCGguAGGCGUUGGAGGCCaGCu -3'
miRNA:   3'- aCGGUGCguUCUGUGACCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 1402 0.78 0.125351
Target:  5'- uUGCaCugGCcagcGAC-CUGGAGGCCUGCc -3'
miRNA:   3'- -ACG-GugCGuu--CUGuGACCUCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 15514 0.77 0.147695
Target:  5'- gGCCGCccgggGCcGGGCGCUGGAGGCgCUGa -3'
miRNA:   3'- aCGGUG-----CGuUCUGUGACCUCCG-GACg -5'
19079 3' -57.2 NC_004684.1 + 43932 0.76 0.183113
Target:  5'- cGUCACGCugucGGGCA-UGGAGGCCaGCa -3'
miRNA:   3'- aCGGUGCGu---UCUGUgACCUCCGGaCG- -5'
19079 3' -57.2 NC_004684.1 + 18672 0.74 0.21442
Target:  5'- cGCCACcgGCAAG-CGCUGGcaGGGCCgccGCa -3'
miRNA:   3'- aCGGUG--CGUUCuGUGACC--UCCGGa--CG- -5'
19079 3' -57.2 NC_004684.1 + 5096 0.74 0.225835
Target:  5'- gGCC-CGCGcGGCGCUGGAGcagcGCCUGg -3'
miRNA:   3'- aCGGuGCGUuCUGUGACCUC----CGGACg -5'
19079 3' -57.2 NC_004684.1 + 61354 0.74 0.225835
Target:  5'- aGCUgggcCGCGAGGCGCUGGcGGCCUa- -3'
miRNA:   3'- aCGGu---GCGUUCUGUGACCuCCGGAcg -5'
19079 3' -57.2 NC_004684.1 + 62306 0.74 0.238372
Target:  5'- cGCCGCGCGGGccuccgcgaucucauCGCcGGAGGCCUccaGCa -3'
miRNA:   3'- aCGGUGCGUUCu--------------GUGaCCUCCGGA---CG- -5'
19079 3' -57.2 NC_004684.1 + 58378 0.74 0.24392
Target:  5'- cGCCcCGCAcGGCACcgcgcgUGGAGGCCUugGCc -3'
miRNA:   3'- aCGGuGCGUuCUGUG------ACCUCCGGA--CG- -5'
19079 3' -57.2 NC_004684.1 + 7218 0.74 0.24392
Target:  5'- gGCCGCGUcuGGGAgCGCgUGGAGGUgUGCc -3'
miRNA:   3'- aCGGUGCG--UUCU-GUG-ACCUCCGgACG- -5'
19079 3' -57.2 NC_004684.1 + 18638 0.73 0.276716
Target:  5'- aGuCCA-GCGuGGCGCUGGAcauGGCCUGCc -3'
miRNA:   3'- aC-GGUgCGUuCUGUGACCU---CCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 28089 0.73 0.279486
Target:  5'- cGCCGCGCGAcccgcaccggguGGugcgguucgaggccuUGCUGGuGGCCUGCa -3'
miRNA:   3'- aCGGUGCGUU------------CU---------------GUGACCuCCGGACG- -5'
19079 3' -57.2 NC_004684.1 + 50882 0.72 0.290789
Target:  5'- cUGCgGCGCAuacGGCACUGGAGcGCggugCUGUa -3'
miRNA:   3'- -ACGgUGCGUu--CUGUGACCUC-CG----GACG- -5'
19079 3' -57.2 NC_004684.1 + 24585 0.72 0.290789
Target:  5'- gGCCAgCGaguugggauCAAGGCcCUGGAGGCCcgGCa -3'
miRNA:   3'- aCGGU-GC---------GUUCUGuGACCUCCGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.