miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 5' -61.6 NC_004684.1 + 15293 1.09 0.000354
Target:  5'- cCUGCUGGGCCUGGUCGACGUGGCCGGu -3'
miRNA:   3'- -GACGACCCGGACCAGCUGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 1928 0.77 0.086239
Target:  5'- cCUGCcGGGCCUGGUacCGGCGcacggUGGCCGc -3'
miRNA:   3'- -GACGaCCCGGACCA--GCUGC-----ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 23656 0.75 0.113813
Target:  5'- gCUGCUGaccggguacaccgacGGCCUGGUCGgcccggaccagaGCGUGGCCu- -3'
miRNA:   3'- -GACGAC---------------CCGGACCAGC------------UGCACCGGcc -5'
19079 5' -61.6 NC_004684.1 + 55852 0.75 0.115633
Target:  5'- uUGCgGGGCg-GGUCGAUGUGGCCc- -3'
miRNA:   3'- gACGaCCCGgaCCAGCUGCACCGGcc -5'
19079 5' -61.6 NC_004684.1 + 42183 0.75 0.13189
Target:  5'- aCUGCgcggugagcagUGGGCCguggagcuggUGGcCGACGUGGCCGc -3'
miRNA:   3'- -GACG-----------ACCCGG----------ACCaGCUGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 1450 0.74 0.146387
Target:  5'- -aGCUGGaccaCCUGGUCGAgacCG-GGCCGGa -3'
miRNA:   3'- gaCGACCc---GGACCAGCU---GCaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 37303 0.72 0.189157
Target:  5'- aCUGC-GGGCCcauucgGcGUCGGugaGUGGCCGGg -3'
miRNA:   3'- -GACGaCCCGGa-----C-CAGCUg--CACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 36877 0.72 0.201952
Target:  5'- aUGCUGguGGCCgUGGUCGGCaaccagcucggacUGGCCGGu -3'
miRNA:   3'- gACGAC--CCGG-ACCAGCUGc------------ACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 2783 0.71 0.21927
Target:  5'- -aGCUGGagguucaGCCggaaccgcaacUGGUCGACGUaccgGGCCGGu -3'
miRNA:   3'- gaCGACC-------CGG-----------ACCAGCUGCA----CCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 63128 0.71 0.230939
Target:  5'- uUGCUGGcgaUGGUgGugGUGGCCGa -3'
miRNA:   3'- gACGACCcggACCAgCugCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 5664 0.71 0.230939
Target:  5'- cCUGCcucaGCCgUGGUCGGagGUGGCCGGg -3'
miRNA:   3'- -GACGacc-CGG-ACCAGCUg-CACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 1723 0.7 0.253382
Target:  5'- cCUGCUGGcgcagGCCUacucgggaccggguaGGUCGggaccggagcugcgcGCGUGGCUGGa -3'
miRNA:   3'- -GACGACC-----CGGA---------------CCAGC---------------UGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 522 0.7 0.260833
Target:  5'- gCUGCUGcaaGGCCUGGaccCGGCGaaaGGCCuGGa -3'
miRNA:   3'- -GACGAC---CCGGACCa--GCUGCa--CCGG-CC- -5'
19079 5' -61.6 NC_004684.1 + 14181 0.69 0.289682
Target:  5'- gUGCUGGGCacccuggacgcauucCUGGccagCGGCGcGGUCGGc -3'
miRNA:   3'- gACGACCCG---------------GACCa---GCUGCaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 8186 0.69 0.300074
Target:  5'- -cGCUGGGCCaGG-CGcagcugaucaagcGCGUGGUCGa -3'
miRNA:   3'- gaCGACCCGGaCCaGC-------------UGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 42406 0.69 0.315103
Target:  5'- -gGUUGGGCaggaugccgccCUGGgacacCGgaaGCGUGGCCGGg -3'
miRNA:   3'- gaCGACCCG-----------GACCa----GC---UGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 57894 0.68 0.345282
Target:  5'- -gGCUGguGGCCgGGcUGAagGUGGCCGGg -3'
miRNA:   3'- gaCGAC--CCGGaCCaGCUg-CACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 31204 0.68 0.345282
Target:  5'- ----aGGGCCUGGaaGACGaccUGGCCGa -3'
miRNA:   3'- gacgaCCCGGACCagCUGC---ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 4486 0.68 0.349985
Target:  5'- -gGCcaGGGCCUGGcccgccguggcaaCGGCaUGGCCGGg -3'
miRNA:   3'- gaCGa-CCCGGACCa------------GCUGcACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 65371 0.68 0.361132
Target:  5'- -cGCU-GGCCUGGUCaACGUcgGGgCGGu -3'
miRNA:   3'- gaCGAcCCGGACCAGcUGCA--CCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.