miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 5' -61.6 NC_004684.1 + 415 0.66 0.47577
Target:  5'- -aGCUGGGCgaCUggcaccccgaGGUCGAC--GGCUGGg -3'
miRNA:   3'- gaCGACCCG--GA----------CCAGCUGcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 522 0.7 0.260833
Target:  5'- gCUGCUGcaaGGCCUGGaccCGGCGaaaGGCCuGGa -3'
miRNA:   3'- -GACGAC---CCGGACCa--GCUGCa--CCGG-CC- -5'
19079 5' -61.6 NC_004684.1 + 1450 0.74 0.146387
Target:  5'- -aGCUGGaccaCCUGGUCGAgacCG-GGCCGGa -3'
miRNA:   3'- gaCGACCc---GGACCAGCU---GCaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 1723 0.7 0.253382
Target:  5'- cCUGCUGGcgcagGCCUacucgggaccggguaGGUCGggaccggagcugcgcGCGUGGCUGGa -3'
miRNA:   3'- -GACGACC-----CGGA---------------CCAGC---------------UGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 1928 0.77 0.086239
Target:  5'- cCUGCcGGGCCUGGUacCGGCGcacggUGGCCGc -3'
miRNA:   3'- -GACGaCCCGGACCA--GCUGC-----ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 2096 0.66 0.485339
Target:  5'- aCUGgUGGcGCagcacuacGGcgCGGCGUGGUCGGa -3'
miRNA:   3'- -GACgACC-CGga------CCa-GCUGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 2783 0.71 0.21927
Target:  5'- -aGCUGGagguucaGCCggaaccgcaacUGGUCGACGUaccgGGCCGGu -3'
miRNA:   3'- gaCGACC-------CGG-----------ACCAGCUGCA----CCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 3257 0.67 0.402922
Target:  5'- gCUGCU-GGCCUGGcCGGacauCGUGgacgcacugcuGCCGGa -3'
miRNA:   3'- -GACGAcCCGGACCaGCU----GCAC-----------CGGCC- -5'
19079 5' -61.6 NC_004684.1 + 3823 0.68 0.377482
Target:  5'- uCUGCUGGGCgCgu-UCGGCGU-GCCGa -3'
miRNA:   3'- -GACGACCCG-GaccAGCUGCAcCGGCc -5'
19079 5' -61.6 NC_004684.1 + 4486 0.68 0.349985
Target:  5'- -gGCcaGGGCCUGGcccgccguggcaaCGGCaUGGCCGGg -3'
miRNA:   3'- gaCGa-CCCGGACCa------------GCUGcACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 5633 0.67 0.394322
Target:  5'- -aGCUGGacGCCUGGuUCGccCGUGGCgGa -3'
miRNA:   3'- gaCGACC--CGGACC-AGCu-GCACCGgCc -5'
19079 5' -61.6 NC_004684.1 + 5664 0.71 0.230939
Target:  5'- cCUGCcucaGCCgUGGUCGGagGUGGCCGGg -3'
miRNA:   3'- -GACGacc-CGG-ACCAGCUg-CACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 8186 0.69 0.300074
Target:  5'- -cGCUGGGCCaGG-CGcagcugaucaagcGCGUGGUCGa -3'
miRNA:   3'- gaCGACCCGGaCCaGC-------------UGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 11722 0.67 0.394322
Target:  5'- cCUGCUGGGCgUUGGUCcGgGUaGGCgaGGa -3'
miRNA:   3'- -GACGACCCG-GACCAGcUgCA-CCGg-CC- -5'
19079 5' -61.6 NC_004684.1 + 14181 0.69 0.289682
Target:  5'- gUGCUGGGCacccuggacgcauucCUGGccagCGGCGcGGUCGGc -3'
miRNA:   3'- gACGACCCG---------------GACCa---GCUGCaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 15133 0.68 0.369245
Target:  5'- -cGCUGGGCCUGaUCcACGccagcgcgcagcUGGCCGc -3'
miRNA:   3'- gaCGACCCGGACcAGcUGC------------ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 15293 1.09 0.000354
Target:  5'- cCUGCUGGGCCUGGUCGACGUGGCCGGu -3'
miRNA:   3'- -GACGACCCGGACCAGCUGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 16439 0.66 0.451346
Target:  5'- gUGCUGGcgcacaccaucgugcGCCUGGaCGA---GGCCGGg -3'
miRNA:   3'- gACGACC---------------CGGACCaGCUgcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 17289 0.66 0.456922
Target:  5'- -aGgUGGgggccagccGCCUGGUCGugGUGGaCUGc -3'
miRNA:   3'- gaCgACC---------CGGACCAGCugCACC-GGCc -5'
19079 5' -61.6 NC_004684.1 + 22992 0.67 0.402922
Target:  5'- -cGCUGaucaacGGCCUGGgcCGAC-UGGCCGc -3'
miRNA:   3'- gaCGAC------CCGGACCa-GCUGcACCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.