miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19079 5' -61.6 NC_004684.1 + 39979 0.66 0.466297
Target:  5'- cCUGCgcuccGGGCacCUGGUCGGUGUGGUgGc -3'
miRNA:   3'- -GACGa----CCCG--GACCAGCUGCACCGgCc -5'
19079 5' -61.6 NC_004684.1 + 3257 0.67 0.402922
Target:  5'- gCUGCU-GGCCUGGcCGGacauCGUGgacgcacugcuGCCGGa -3'
miRNA:   3'- -GACGAcCCGGACCaGCU----GCAC-----------CGGCC- -5'
19079 5' -61.6 NC_004684.1 + 22992 0.67 0.402922
Target:  5'- -cGCUGaucaacGGCCUGGgcCGAC-UGGCCGc -3'
miRNA:   3'- gaCGAC------CCGGACCa-GCUGcACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 50593 0.67 0.402922
Target:  5'- aUGCcgucGGGUCggcGGUCGgcgggucaucgGCGUGGCCGa -3'
miRNA:   3'- gACGa---CCCGGa--CCAGC-----------UGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 40341 0.67 0.420475
Target:  5'- -cGCUGGGCaggucgCUGG-CGGCGgccuUGGCCuuGGg -3'
miRNA:   3'- gaCGACCCG------GACCaGCUGC----ACCGG--CC- -5'
19079 5' -61.6 NC_004684.1 + 25995 0.66 0.438482
Target:  5'- -cGCUGGcgcuCCUGG-CGGC--GGCCGGg -3'
miRNA:   3'- gaCGACCc---GGACCaGCUGcaCCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 47736 0.66 0.438482
Target:  5'- uUG-UGGGUgUGGUUGuguugcGCGuUGGCCGGa -3'
miRNA:   3'- gACgACCCGgACCAGC------UGC-ACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 49203 0.66 0.447649
Target:  5'- cCUGCUcggucGGCCagucGGUCGGUGccgGGCCGGg -3'
miRNA:   3'- -GACGAc----CCGGa---CCAGCUGCa--CCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 62966 0.66 0.447649
Target:  5'- aUGgUGGcguGCUcggUGGUgCGcACGUGGCCGGu -3'
miRNA:   3'- gACgACC---CGG---ACCA-GC-UGCACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 11722 0.67 0.394322
Target:  5'- cCUGCUGGGCgUUGGUCcGgGUaGGCgaGGa -3'
miRNA:   3'- -GACGACCCG-GACCAGcUgCA-CCGg-CC- -5'
19079 5' -61.6 NC_004684.1 + 66167 0.67 0.385841
Target:  5'- uUGCUGGcagauccaGCCgguggUGGUgGugGUGGCCa- -3'
miRNA:   3'- gACGACC--------CGG-----ACCAgCugCACCGGcc -5'
19079 5' -61.6 NC_004684.1 + 42546 0.68 0.377482
Target:  5'- gUGCUGacGGCgUucGGcuUCGGCGUGGCCGc -3'
miRNA:   3'- gACGAC--CCGgA--CC--AGCUGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 42183 0.75 0.13189
Target:  5'- aCUGCgcggugagcagUGGGCCguggagcuggUGGcCGACGUGGCCGc -3'
miRNA:   3'- -GACG-----------ACCCGG----------ACCaGCUGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 36877 0.72 0.201952
Target:  5'- aUGCUGguGGCCgUGGUCGGCaaccagcucggacUGGCCGGu -3'
miRNA:   3'- gACGAC--CCGG-ACCAGCUGc------------ACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 522 0.7 0.260833
Target:  5'- gCUGCUGcaaGGCCUGGaccCGGCGaaaGGCCuGGa -3'
miRNA:   3'- -GACGAC---CCGGACCa--GCUGCa--CCGG-CC- -5'
19079 5' -61.6 NC_004684.1 + 8186 0.69 0.300074
Target:  5'- -cGCUGGGCCaGG-CGcagcugaucaagcGCGUGGUCGa -3'
miRNA:   3'- gaCGACCCGGaCCaGC-------------UGCACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 31204 0.68 0.345282
Target:  5'- ----aGGGCCUGGaaGACGaccUGGCCGa -3'
miRNA:   3'- gacgaCCCGGACCagCUGC---ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 57894 0.68 0.345282
Target:  5'- -gGCUGguGGCCgGGcUGAagGUGGCCGGg -3'
miRNA:   3'- gaCGAC--CCGGaCCaGCUg-CACCGGCC- -5'
19079 5' -61.6 NC_004684.1 + 15133 0.68 0.369245
Target:  5'- -cGCUGGGCCUGaUCcACGccagcgcgcagcUGGCCGc -3'
miRNA:   3'- gaCGACCCGGACcAGcUGC------------ACCGGCc -5'
19079 5' -61.6 NC_004684.1 + 3823 0.68 0.377482
Target:  5'- uCUGCUGGGCgCgu-UCGGCGU-GCCGa -3'
miRNA:   3'- -GACGACCCG-GaccAGCUGCAcCGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.