miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 15112 1.09 0.001901
Target:  5'- gUGCCAGCAAGCUGGUGUUCCACAACGc -3'
miRNA:   3'- -ACGGUCGUUCGACCACAAGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 2636 0.81 0.155713
Target:  5'- gGCCaacgcaugAGCGAGCUGGUGUUCCugA-CGg -3'
miRNA:   3'- aCGG--------UCGUUCGACCACAAGGugUuGC- -5'
19080 5' -53.2 NC_004684.1 + 4782 0.79 0.199387
Target:  5'- cGCCAGCAAGCgccucggcgcGGUGgccgaCCGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa---------CCACaa---GGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 4278 0.76 0.310905
Target:  5'- cGCCAGCAAGggcCUGGUGcugCCAC-ACGa -3'
miRNA:   3'- aCGGUCGUUC---GACCACaa-GGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 43873 0.75 0.360255
Target:  5'- gGUgAGCAGGCUGGUGacgCCggACAGCGu -3'
miRNA:   3'- aCGgUCGUUCGACCACaa-GG--UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 46383 0.74 0.396067
Target:  5'- gGUCAGCGAGCUaugGGUGcgCCGCAGg- -3'
miRNA:   3'- aCGGUCGUUCGA---CCACaaGGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 41259 0.73 0.463963
Target:  5'- gGCCAGCGAgguGCUGGUGcggUCgGaCAGCGc -3'
miRNA:   3'- aCGGUCGUU---CGACCACa--AGgU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 30183 0.72 0.474156
Target:  5'- cGgCGGCGAGCUGGUGgccaCCAaaccCGGCGa -3'
miRNA:   3'- aCgGUCGUUCGACCACaa--GGU----GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 33820 0.72 0.48446
Target:  5'- cGUCGGCGGGC-GGUGUgCCcgGCGGCGg -3'
miRNA:   3'- aCGGUCGUUCGaCCACAaGG--UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 65003 0.72 0.49487
Target:  5'- cGCCAGCGGcGUUGGUGguguggCCAUAGgCGa -3'
miRNA:   3'- aCGGUCGUU-CGACCACaa----GGUGUU-GC- -5'
19080 5' -53.2 NC_004684.1 + 13267 0.72 0.515986
Target:  5'- cGCCAGCGcGCUGGUGg-CCGCcgGugGc -3'
miRNA:   3'- aCGGUCGUuCGACCACaaGGUG--UugC- -5'
19080 5' -53.2 NC_004684.1 + 8526 0.72 0.515986
Target:  5'- cGCCAGCAAGUcgcGGcUGaUCgGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa--CC-ACaAGgUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 12212 0.72 0.515986
Target:  5'- cGCCAGCGGuGCguucuccgggGGUGcUUCCgGCAGCGg -3'
miRNA:   3'- aCGGUCGUU-CGa---------CCAC-AAGG-UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 58966 0.71 0.52668
Target:  5'- gGcCCGGCGGGCgcgcGG-GUUCCACAcACGg -3'
miRNA:   3'- aC-GGUCGUUCGa---CCaCAAGGUGU-UGC- -5'
19080 5' -53.2 NC_004684.1 + 24165 0.71 0.530981
Target:  5'- cGCUGGCGAgaagaucaaggacauGCUGGUGUUCCAgCAGg- -3'
miRNA:   3'- aCGGUCGUU---------------CGACCACAAGGU-GUUgc -5'
19080 5' -53.2 NC_004684.1 + 44983 0.71 0.548307
Target:  5'- gGcCCAGCGGGCUGGUuaGgaaUCCGcCGACGc -3'
miRNA:   3'- aC-GGUCGUUCGACCA--Ca--AGGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 16594 0.71 0.548307
Target:  5'- cGCCAGCGucuGCUGGUGgccUCCuGCAu-- -3'
miRNA:   3'- aCGGUCGUu--CGACCACa--AGG-UGUugc -5'
19080 5' -53.2 NC_004684.1 + 45346 0.71 0.548307
Target:  5'- gUGCCuGGC--GCUGGcUGUUCCGCAugucGCGg -3'
miRNA:   3'- -ACGG-UCGuuCGACC-ACAAGGUGU----UGC- -5'
19080 5' -53.2 NC_004684.1 + 55813 0.71 0.552667
Target:  5'- -aCCGGCGGGCUGGUGUggaacucgcgguagCCGCugugguuGCGg -3'
miRNA:   3'- acGGUCGUUCGACCACAa-------------GGUGu------UGC- -5'
19080 5' -53.2 NC_004684.1 + 11375 0.71 0.559226
Target:  5'- gGCCAGC-AGCgUGGUGgUgCGCGACu -3'
miRNA:   3'- aCGGUCGuUCG-ACCACaAgGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.