miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 2084 0.67 0.777417
Target:  5'- cGCCAGCucGCaacUGGUGg--CGCAGCa -3'
miRNA:   3'- aCGGUCGuuCG---ACCACaagGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 2285 0.66 0.835078
Target:  5'- cGCCAGC---CUGGg---CCACGACGc -3'
miRNA:   3'- aCGGUCGuucGACCacaaGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 2636 0.81 0.155713
Target:  5'- gGCCaacgcaugAGCGAGCUGGUGUUCCugA-CGg -3'
miRNA:   3'- aCGG--------UCGUUCGACCACAAGGugUuGC- -5'
19080 5' -53.2 NC_004684.1 + 4278 0.76 0.310905
Target:  5'- cGCCAGCAAGggcCUGGUGcugCCAC-ACGa -3'
miRNA:   3'- aCGGUCGUUC---GACCACaa-GGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 4405 0.66 0.835078
Target:  5'- cGCCAGCAAGUccUGGccg-CCggaACAACGc -3'
miRNA:   3'- aCGGUCGUUCG--ACCacaaGG---UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 4782 0.79 0.199387
Target:  5'- cGCCAGCAAGCgccucggcgcGGUGgccgaCCGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa---------CCACaa---GGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 6471 0.66 0.816625
Target:  5'- aUGaCCAGCuGGGCggcggUGGUGUUCgACAuCGg -3'
miRNA:   3'- -AC-GGUCG-UUCG-----ACCACAAGgUGUuGC- -5'
19080 5' -53.2 NC_004684.1 + 7576 0.67 0.777417
Target:  5'- cGCUGGUGcGGCUGGUGcgCgGCAACc -3'
miRNA:   3'- aCGGUCGU-UCGACCACaaGgUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 8526 0.72 0.515986
Target:  5'- cGCCAGCAAGUcgcGGcUGaUCgGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa--CC-ACaAGgUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 9549 0.7 0.603418
Target:  5'- cGCCGGUugGAGCcGGUGcgCCGCGAa- -3'
miRNA:   3'- aCGGUCG--UUCGaCCACaaGGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 10204 0.66 0.825956
Target:  5'- cGCCAGCGAGCgcuggaGGUGccugCCcaggugcgcgaGCAGCu -3'
miRNA:   3'- aCGGUCGUUCGa-----CCACaa--GG-----------UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 11375 0.71 0.559226
Target:  5'- gGCCAGC-AGCgUGGUGgUgCGCGACu -3'
miRNA:   3'- aCGGUCGuUCG-ACCACaAgGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 11723 0.69 0.670255
Target:  5'- gGuCCAGC-AGCUGGUGcgCCGCcaGGCc -3'
miRNA:   3'- aC-GGUCGuUCGACCACaaGGUG--UUGc -5'
19080 5' -53.2 NC_004684.1 + 12212 0.72 0.515986
Target:  5'- cGCCAGCGGuGCguucuccgggGGUGcUUCCgGCAGCGg -3'
miRNA:   3'- aCGGUCGUU-CGa---------CCAC-AAGG-UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 12908 0.69 0.692354
Target:  5'- cGCCAGCGGuGCcGGUGcgCCGuCGGCc -3'
miRNA:   3'- aCGGUCGUU-CGaCCACaaGGU-GUUGc -5'
19080 5' -53.2 NC_004684.1 + 13267 0.72 0.515986
Target:  5'- cGCCAGCGcGCUGGUGg-CCGCcgGugGc -3'
miRNA:   3'- aCGGUCGUuCGACCACaaGGUG--UugC- -5'
19080 5' -53.2 NC_004684.1 + 15112 1.09 0.001901
Target:  5'- gUGCCAGCAAGCUGGUGUUCCACAACGc -3'
miRNA:   3'- -ACGGUCGUUCGACCACAAGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 15173 0.69 0.648008
Target:  5'- cGCCAcGCAccugGGaCUGGUGcUgCGCAGCGg -3'
miRNA:   3'- aCGGU-CGU----UC-GACCACaAgGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 16477 0.68 0.714214
Target:  5'- cUGUgGGCAGGC-GGUGUugUUUACAGCa -3'
miRNA:   3'- -ACGgUCGUUCGaCCACA--AGGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 16594 0.71 0.548307
Target:  5'- cGCCAGCGucuGCUGGUGgccUCCuGCAu-- -3'
miRNA:   3'- aCGGUCGUu--CGACCACa--AGG-UGUugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.