miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19080 5' -53.2 NC_004684.1 + 26834 0.68 0.756842
Target:  5'- -aCCAGCGcGCUGGUGgaCCGgucgagcacCAGCGa -3'
miRNA:   3'- acGGUCGUuCGACCACaaGGU---------GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 60463 0.69 0.648008
Target:  5'- gGCCAGCAuGCcGGgcaGUUCCucggGCAACa -3'
miRNA:   3'- aCGGUCGUuCGaCCa--CAAGG----UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 29121 0.69 0.67469
Target:  5'- cGCCAgaccagcacguGCGAGCUGGUGgugCCgacgcaguucgccgcGCAGCa -3'
miRNA:   3'- aCGGU-----------CGUUCGACCACaa-GG---------------UGUUGc -5'
19080 5' -53.2 NC_004684.1 + 43997 0.69 0.681329
Target:  5'- gGCCAGCugcGUUGGccagGUcaUCCACGACc -3'
miRNA:   3'- aCGGUCGuu-CGACCa---CA--AGGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 12908 0.69 0.692354
Target:  5'- cGCCAGCGGuGCcGGUGcgCCGuCGGCc -3'
miRNA:   3'- aCGGUCGUU-CGaCCACaaGGU-GUUGc -5'
19080 5' -53.2 NC_004684.1 + 37203 0.68 0.714214
Target:  5'- gGCCAGCu-GCUGGUGUgcgugagCUAUuuCGc -3'
miRNA:   3'- aCGGUCGuuCGACCACAa------GGUGuuGC- -5'
19080 5' -53.2 NC_004684.1 + 16477 0.68 0.714214
Target:  5'- cUGUgGGCAGGC-GGUGUugUUUACAGCa -3'
miRNA:   3'- -ACGgUCGUUCGaCCACA--AGGUGUUGc -5'
19080 5' -53.2 NC_004684.1 + 42637 0.68 0.725026
Target:  5'- cGCCGGU--GCUGGUGccgCCAgCGAUGa -3'
miRNA:   3'- aCGGUCGuuCGACCACaa-GGU-GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 57125 0.68 0.756842
Target:  5'- cGCUGGCAgcacuggcgcGGCUGGUucgccUCCAUGGCGg -3'
miRNA:   3'- aCGGUCGU----------UCGACCAca---AGGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 51914 0.69 0.648008
Target:  5'- gGCgaaCGGguGGCUGGUGgUCCACucGACGc -3'
miRNA:   3'- aCG---GUCguUCGACCACaAGGUG--UUGC- -5'
19080 5' -53.2 NC_004684.1 + 15173 0.69 0.648008
Target:  5'- cGCCAcGCAccugGGaCUGGUGcUgCGCAGCGg -3'
miRNA:   3'- aCGGU-CGU----UC-GACCACaAgGUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 9549 0.7 0.603418
Target:  5'- cGCCGGUugGAGCcGGUGcgCCGCGAa- -3'
miRNA:   3'- aCGGUCG--UUCGaCCACaaGGUGUUgc -5'
19080 5' -53.2 NC_004684.1 + 4278 0.76 0.310905
Target:  5'- cGCCAGCAAGggcCUGGUGcugCCAC-ACGa -3'
miRNA:   3'- aCGGUCGUUC---GACCACaa-GGUGuUGC- -5'
19080 5' -53.2 NC_004684.1 + 30183 0.72 0.474156
Target:  5'- cGgCGGCGAGCUGGUGgccaCCAaaccCGGCGa -3'
miRNA:   3'- aCgGUCGUUCGACCACaa--GGU----GUUGC- -5'
19080 5' -53.2 NC_004684.1 + 33820 0.72 0.48446
Target:  5'- cGUCGGCGGGC-GGUGUgCCcgGCGGCGg -3'
miRNA:   3'- aCGGUCGUUCGaCCACAaGG--UGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 65003 0.72 0.49487
Target:  5'- cGCCAGCGGcGUUGGUGguguggCCAUAGgCGa -3'
miRNA:   3'- aCGGUCGUU-CGACCACaa----GGUGUU-GC- -5'
19080 5' -53.2 NC_004684.1 + 8526 0.72 0.515986
Target:  5'- cGCCAGCAAGUcgcGGcUGaUCgGCAACGg -3'
miRNA:   3'- aCGGUCGUUCGa--CC-ACaAGgUGUUGC- -5'
19080 5' -53.2 NC_004684.1 + 13267 0.72 0.515986
Target:  5'- cGCCAGCGcGCUGGUGg-CCGCcgGugGc -3'
miRNA:   3'- aCGGUCGUuCGACCACaaGGUG--UugC- -5'
19080 5' -53.2 NC_004684.1 + 16594 0.71 0.548307
Target:  5'- cGCCAGCGucuGCUGGUGgccUCCuGCAu-- -3'
miRNA:   3'- aCGGUCGUu--CGACCACa--AGG-UGUugc -5'
19080 5' -53.2 NC_004684.1 + 48957 0.7 0.603418
Target:  5'- cGUCGGCGGGCggGGUGg-CCGgGGCGg -3'
miRNA:   3'- aCGGUCGUUCGa-CCACaaGGUgUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.