miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 5' -56.2 NC_004684.1 + 14708 1.09 0.000924
Target:  5'- gAGGACCUGGCCAACCGGGUCAAAGAGg -3'
miRNA:   3'- -UCCUGGACCGGUUGGCCCAGUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 42206 0.82 0.080218
Target:  5'- cAGcGCCUGGCCAACCaGGUCGGAGAu -3'
miRNA:   3'- -UCcUGGACCGGUUGGcCCAGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 2118 0.75 0.24392
Target:  5'- gGGGaACCgUGGCCAuuGCCGGGUUccuGGGAGc -3'
miRNA:   3'- -UCC-UGG-ACCGGU--UGGCCCAGu--UUCUC- -5'
19083 5' -56.2 NC_004684.1 + 3031 0.73 0.305416
Target:  5'- uGGAgCUGaccgcGCCGACCGGGuUCAAGGAc -3'
miRNA:   3'- uCCUgGAC-----CGGUUGGCCC-AGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 15935 0.72 0.369494
Target:  5'- gGGGGCCUcGGCC-ACCGGGcgCAu-GAGc -3'
miRNA:   3'- -UCCUGGA-CCGGuUGGCCCa-GUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 4489 0.72 0.369494
Target:  5'- cAGGGCCUGGCCcGCCGuGG-CAAcGGc -3'
miRNA:   3'- -UCCUGGACCGGuUGGC-CCaGUUuCUc -5'
19083 5' -56.2 NC_004684.1 + 11164 0.71 0.411209
Target:  5'- uGGACCUGGCCGccaGCgagUGGGUCAugaccgaccgggacGAGAa -3'
miRNA:   3'- uCCUGGACCGGU---UG---GCCCAGU--------------UUCUc -5'
19083 5' -56.2 NC_004684.1 + 2704 0.7 0.442186
Target:  5'- -cGGCCUGGCCGguGCCGGGggCAAGu-- -3'
miRNA:   3'- ucCUGGACCGGU--UGGCCCa-GUUUcuc -5'
19083 5' -56.2 NC_004684.1 + 41087 0.7 0.44603
Target:  5'- cGGcGGCCUGGCCGagcugcguaccgaugGCCGaGGUCAccGAa -3'
miRNA:   3'- -UC-CUGGACCGGU---------------UGGC-CCAGUuuCUc -5'
19083 5' -56.2 NC_004684.1 + 58725 0.7 0.451831
Target:  5'- cAGGcACCUGGCCGcACCGGG-CAc---- -3'
miRNA:   3'- -UCC-UGGACCGGU-UGGCCCaGUuucuc -5'
19083 5' -56.2 NC_004684.1 + 57887 0.7 0.491509
Target:  5'- cGGugCUGGCUgguGGCCGGGcUGAAGGu -3'
miRNA:   3'- uCCugGACCGG---UUGGCCCaGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 14565 0.69 0.501682
Target:  5'- uGGAcaCCUGGUgcGCCGGGgccacCGAGGAGg -3'
miRNA:   3'- uCCU--GGACCGguUGGCCCa----GUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 13595 0.69 0.501682
Target:  5'- cAGGACCagGGCUGGCCGGaacUCAccGAGu -3'
miRNA:   3'- -UCCUGGa-CCGGUUGGCCc--AGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 1412 0.69 0.511945
Target:  5'- cAGcGACCUggaGGCCuGCCGGGcCAAGGu- -3'
miRNA:   3'- -UC-CUGGA---CCGGuUGGCCCaGUUUCuc -5'
19083 5' -56.2 NC_004684.1 + 47241 0.69 0.522295
Target:  5'- aAGGGCCgGGCCGucACCGG--CGAAGAa -3'
miRNA:   3'- -UCCUGGaCCGGU--UGGCCcaGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 28257 0.69 0.543227
Target:  5'- uGGACCcGGCCAGCCuGGUgCGc-GAGg -3'
miRNA:   3'- uCCUGGaCCGGUUGGcCCA-GUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 18337 0.69 0.543227
Target:  5'- gAGcACCUGGCCGagccuGCCGaGGagGAGGAGc -3'
miRNA:   3'- -UCcUGGACCGGU-----UGGC-CCagUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 55263 0.69 0.553797
Target:  5'- gAGGAgCUGGUgGACCGGcUCAagAAGAu -3'
miRNA:   3'- -UCCUgGACCGgUUGGCCcAGU--UUCUc -5'
19083 5' -56.2 NC_004684.1 + 56301 0.69 0.553797
Target:  5'- cGGcCCUGGCgcGCCGGGaCGuGGAGa -3'
miRNA:   3'- uCCuGGACCGguUGGCCCaGUuUCUC- -5'
19083 5' -56.2 NC_004684.1 + 46922 0.68 0.564427
Target:  5'- cAGGACC-GGCCAACgGcGGUguGGGuGa -3'
miRNA:   3'- -UCCUGGaCCGGUUGgC-CCAguUUCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.