miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 5' -56.2 NC_004684.1 + 409 0.67 0.661506
Target:  5'- gGGGAaauCCUGGUgcACUGGGUCGAcguGGAc -3'
miRNA:   3'- -UCCU---GGACCGguUGGCCCAGUU---UCUc -5'
19083 5' -56.2 NC_004684.1 + 462 0.66 0.704367
Target:  5'- cGuGGCCgUGGaCAACCGGGcCAgcGAGg -3'
miRNA:   3'- uC-CUGG-ACCgGUUGGCCCaGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 1412 0.69 0.511945
Target:  5'- cAGcGACCUggaGGCCuGCCGGGcCAAGGu- -3'
miRNA:   3'- -UC-CUGGA---CCGGuUGGCCCaGUUUCuc -5'
19083 5' -56.2 NC_004684.1 + 1919 0.67 0.661506
Target:  5'- cGGACCcGGCCuGCCGGGcCu--GGu -3'
miRNA:   3'- uCCUGGaCCGGuUGGCCCaGuuuCUc -5'
19083 5' -56.2 NC_004684.1 + 2118 0.75 0.24392
Target:  5'- gGGGaACCgUGGCCAuuGCCGGGUUccuGGGAGc -3'
miRNA:   3'- -UCC-UGG-ACCGGU--UGGCCCAGu--UUCUC- -5'
19083 5' -56.2 NC_004684.1 + 2704 0.7 0.442186
Target:  5'- -cGGCCUGGCCGguGCCGGGggCAAGu-- -3'
miRNA:   3'- ucCUGGACCGGU--UGGCCCa-GUUUcuc -5'
19083 5' -56.2 NC_004684.1 + 3031 0.73 0.305416
Target:  5'- uGGAgCUGaccgcGCCGACCGGGuUCAAGGAc -3'
miRNA:   3'- uCCUgGAC-----CGGUUGGCCC-AGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 4046 0.68 0.596605
Target:  5'- cGGuGGCCUaccGGCCAucGCCGGGUgAccGGGu -3'
miRNA:   3'- -UC-CUGGA---CCGGU--UGGCCCAgUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 4489 0.72 0.369494
Target:  5'- cAGGGCCUGGCCcGCCGuGG-CAAcGGc -3'
miRNA:   3'- -UCCUGGACCGGuUGGC-CCaGUUuCUc -5'
19083 5' -56.2 NC_004684.1 + 6831 0.66 0.683031
Target:  5'- gAGGAgCUGGCCua-CGGcG-CGAAGGGc -3'
miRNA:   3'- -UCCUgGACCGGuugGCC-CaGUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 7756 0.67 0.639875
Target:  5'- gGGGACCUgaccgGGCCGacccccACCGuGGUCGAGc-- -3'
miRNA:   3'- -UCCUGGA-----CCGGU------UGGC-CCAGUUUcuc -5'
19083 5' -56.2 NC_004684.1 + 9526 0.66 0.735832
Target:  5'- cGGuCCUGGCguGCCGGGacgcuggcaaUCGGGcGGGu -3'
miRNA:   3'- uCCuGGACCGguUGGCCC----------AGUUU-CUC- -5'
19083 5' -56.2 NC_004684.1 + 10016 0.67 0.639875
Target:  5'- cGGACCUGccgcgcGCCGACCGGGa------- -3'
miRNA:   3'- uCCUGGAC------CGGUUGGCCCaguuucuc -5'
19083 5' -56.2 NC_004684.1 + 10264 0.68 0.584765
Target:  5'- cGGGCCaaccaacUGGCCAgcgacGCCGGuGUCGcgccAGAGg -3'
miRNA:   3'- uCCUGG-------ACCGGU-----UGGCC-CAGUu---UCUC- -5'
19083 5' -56.2 NC_004684.1 + 11164 0.71 0.411209
Target:  5'- uGGACCUGGCCGccaGCgagUGGGUCAugaccgaccgggacGAGAa -3'
miRNA:   3'- uCCUGGACCGGU---UG---GCCCAGU--------------UUCUc -5'
19083 5' -56.2 NC_004684.1 + 13595 0.69 0.501682
Target:  5'- cAGGACCagGGCUGGCCGGaacUCAccGAGu -3'
miRNA:   3'- -UCCUGGa-CCGGUUGGCCc--AGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 14194 0.66 0.72543
Target:  5'- uGGAcgcauuCCUGGCCAGCggCGcGGUCGGccuguccccGGAGg -3'
miRNA:   3'- uCCU------GGACCGGUUG--GC-CCAGUU---------UCUC- -5'
19083 5' -56.2 NC_004684.1 + 14565 0.69 0.501682
Target:  5'- uGGAcaCCUGGUgcGCCGGGgccacCGAGGAGg -3'
miRNA:   3'- uCCU--GGACCGguUGGCCCa----GUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 14708 1.09 0.000924
Target:  5'- gAGGACCUGGCCAACCGGGUCAAAGAGg -3'
miRNA:   3'- -UCCUGGACCGGUUGGCCCAGUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 15298 0.68 0.564427
Target:  5'- uGGGCCUGGUCGacgugGCCGGuGgCAuGGAGc -3'
miRNA:   3'- uCCUGGACCGGU-----UGGCC-CaGUuUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.