miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 5' -56.2 NC_004684.1 + 56686 0.66 0.72543
Target:  5'- cGGugCUGGCgCAgaaGCUGGGcCcGGGGGu -3'
miRNA:   3'- uCCugGACCG-GU---UGGCCCaGuUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 37561 0.67 0.618217
Target:  5'- uGGACCcGGUguACCGGGagcuGGAGg -3'
miRNA:   3'- uCCUGGaCCGguUGGCCCaguuUCUC- -5'
19083 5' -56.2 NC_004684.1 + 41478 0.67 0.618217
Target:  5'- cGGugCUGGCCAaggugauggacaACCGGGUg------ -3'
miRNA:   3'- uCCugGACCGGU------------UGGCCCAguuucuc -5'
19083 5' -56.2 NC_004684.1 + 10016 0.67 0.639875
Target:  5'- cGGACCUGccgcgcGCCGACCGGGa------- -3'
miRNA:   3'- uCCUGGAC------CGGUUGGCCCaguuucuc -5'
19083 5' -56.2 NC_004684.1 + 409 0.67 0.661506
Target:  5'- gGGGAaauCCUGGUgcACUGGGUCGAcguGGAc -3'
miRNA:   3'- -UCCU---GGACCGguUGGCCCAGUU---UCUc -5'
19083 5' -56.2 NC_004684.1 + 6831 0.66 0.683031
Target:  5'- gAGGAgCUGGCCua-CGGcG-CGAAGGGc -3'
miRNA:   3'- -UCCUgGACCGGuugGCC-CaGUUUCUC- -5'
19083 5' -56.2 NC_004684.1 + 60742 0.66 0.693728
Target:  5'- cGGcGACCgggUGGCC-GCCGGGUgGGGGu- -3'
miRNA:   3'- -UC-CUGG---ACCGGuUGGCCCAgUUUCuc -5'
19083 5' -56.2 NC_004684.1 + 462 0.66 0.704367
Target:  5'- cGuGGCCgUGGaCAACCGGGcCAgcGAGg -3'
miRNA:   3'- uC-CUGG-ACCgGUUGGCCCaGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 31012 0.66 0.72543
Target:  5'- uGGGCCUGacGCCGACCGGugaGUUcuGGGa -3'
miRNA:   3'- uCCUGGAC--CGGUUGGCC---CAGuuUCUc -5'
19083 5' -56.2 NC_004684.1 + 62819 0.68 0.596605
Target:  5'- gGGGAgCUuucaGGCCGACCGGGugUCGGuGAu -3'
miRNA:   3'- -UCCUgGA----CCGGUUGGCCC--AGUUuCUc -5'
19083 5' -56.2 NC_004684.1 + 4046 0.68 0.596605
Target:  5'- cGGuGGCCUaccGGCCAucGCCGGGUgAccGGGu -3'
miRNA:   3'- -UC-CUGGA---CCGGU--UGGCCCAgUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 10264 0.68 0.584765
Target:  5'- cGGGCCaaccaacUGGCCAgcgacGCCGGuGUCGcgccAGAGg -3'
miRNA:   3'- uCCUGG-------ACCGGU-----UGGCC-CAGUu---UCUC- -5'
19083 5' -56.2 NC_004684.1 + 2704 0.7 0.442186
Target:  5'- -cGGCCUGGCCGguGCCGGGggCAAGu-- -3'
miRNA:   3'- ucCUGGACCGGU--UGGCCCa-GUUUcuc -5'
19083 5' -56.2 NC_004684.1 + 58725 0.7 0.451831
Target:  5'- cAGGcACCUGGCCGcACCGGG-CAc---- -3'
miRNA:   3'- -UCC-UGGACCGGU-UGGCCCaGUuucuc -5'
19083 5' -56.2 NC_004684.1 + 57887 0.7 0.491509
Target:  5'- cGGugCUGGCUgguGGCCGGGcUGAAGGu -3'
miRNA:   3'- uCCugGACCGG---UUGGCCCaGUUUCUc -5'
19083 5' -56.2 NC_004684.1 + 13595 0.69 0.501682
Target:  5'- cAGGACCagGGCUGGCCGGaacUCAccGAGu -3'
miRNA:   3'- -UCCUGGa-CCGGUUGGCCc--AGUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 28257 0.69 0.543227
Target:  5'- uGGACCcGGCCAGCCuGGUgCGc-GAGg -3'
miRNA:   3'- uCCUGGaCCGGUUGGcCCA-GUuuCUC- -5'
19083 5' -56.2 NC_004684.1 + 55263 0.69 0.553797
Target:  5'- gAGGAgCUGGUgGACCGGcUCAagAAGAu -3'
miRNA:   3'- -UCCUgGACCGgUUGGCCcAGU--UUCUc -5'
19083 5' -56.2 NC_004684.1 + 56301 0.69 0.553797
Target:  5'- cGGcCCUGGCgcGCCGGGaCGuGGAGa -3'
miRNA:   3'- uCCuGGACCGguUGGCCCaGUuUCUC- -5'
19083 5' -56.2 NC_004684.1 + 46922 0.68 0.564427
Target:  5'- cAGGACC-GGCCAACgGcGGUguGGGuGa -3'
miRNA:   3'- -UCCUGGaCCGGUUGgC-CCAguUUCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.