miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 13368 1.07 0.000655
Target:  5'- cCCGCCACGAAGGCCGAGGAGGCACAAc -3'
miRNA:   3'- -GGCGGUGCUUCCGGCUCCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 19330 0.77 0.099677
Target:  5'- gCCGCCGCcguGGCCGAgcgGGAGGCGCu- -3'
miRNA:   3'- -GGCGGUGcuuCCGGCU---CCUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 6491 0.76 0.125229
Target:  5'- -gGCCGagauggucgaugaacUGGAGGCCGAGGAGGUGCGc -3'
miRNA:   3'- ggCGGU---------------GCUUCCGGCUCCUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 60631 0.75 0.149434
Target:  5'- gUCGCCcauGCGcAGGGUCGAGGGGGCAgGu -3'
miRNA:   3'- -GGCGG---UGC-UUCCGGCUCCUCCGUgUu -5'
19088 5' -59.5 NC_004684.1 + 42047 0.75 0.149434
Target:  5'- gCCGCCGCcAAGGCCaccGGGGAGGC-CGc -3'
miRNA:   3'- -GGCGGUGcUUCCGG---CUCCUCCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 43414 0.75 0.159246
Target:  5'- gCCGCCGCcGAacccgaggcccggcgAGGCCGAGGucggugcggcGGGCGCGg -3'
miRNA:   3'- -GGCGGUG-CU---------------UCCGGCUCC----------UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 3811 0.74 0.167863
Target:  5'- aCCGCCGCGccgcgcaggccgaugGAccugauggcagcGGCCGAGGAGGC-CGAg -3'
miRNA:   3'- -GGCGGUGC---------------UU------------CCGGCUCCUCCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 54280 0.73 0.194246
Target:  5'- gCCGCCACcc-GGCCGGGGGuGCGCGc -3'
miRNA:   3'- -GGCGGUGcuuCCGGCUCCUcCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 15515 0.73 0.199323
Target:  5'- gCCGCC-CG-GGGCCGGgcgcuGGAGGCGCu- -3'
miRNA:   3'- -GGCGGuGCuUCCGGCU-----CCUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 5592 0.73 0.204515
Target:  5'- cCCGCCugcCGAcgGGGCCGAGcuGGCGCGc -3'
miRNA:   3'- -GGCGGu--GCU--UCCGGCUCcuCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 16201 0.73 0.204515
Target:  5'- cCCGgugaugacaguUCACGGAGG-UGAGGAGGCGCGAu -3'
miRNA:   3'- -GGC-----------GGUGCUUCCgGCUCCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 18835 0.73 0.209825
Target:  5'- cUCGgCGCGcAGGCCGAGGuguGGCAgGAg -3'
miRNA:   3'- -GGCgGUGCuUCCGGCUCCu--CCGUgUU- -5'
19088 5' -59.5 NC_004684.1 + 66693 0.72 0.244218
Target:  5'- gCCGuCCAcCGGcggcugaccucgGGGCCGAGGAucaGGCGCAc -3'
miRNA:   3'- -GGC-GGU-GCU------------UCCGGCUCCU---CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 15015 0.71 0.256683
Target:  5'- gCCGCCugGAucGGCUG-GGAcGGCACc- -3'
miRNA:   3'- -GGCGGugCUu-CCGGCuCCU-CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 12851 0.71 0.256683
Target:  5'- -gGUCGCGGAGGCCGAGGccGC-CAc -3'
miRNA:   3'- ggCGGUGCUUCCGGCUCCucCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 246 0.71 0.269664
Target:  5'- gCCGCCACGAucaucgugcAGGCCGAcgGcGAGGCcuucguGCAc -3'
miRNA:   3'- -GGCGGUGCU---------UCCGGCU--C-CUCCG------UGUu -5'
19088 5' -59.5 NC_004684.1 + 55561 0.71 0.27635
Target:  5'- gCCGCCGuggccCGguGGCCGGGGguccAGGCACc- -3'
miRNA:   3'- -GGCGGU-----GCuuCCGGCUCC----UCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 10339 0.71 0.283169
Target:  5'- gCCGCCAuCGAccccGCCGGGGAGGaCAUg- -3'
miRNA:   3'- -GGCGGU-GCUuc--CGGCUCCUCC-GUGuu -5'
19088 5' -59.5 NC_004684.1 + 15508 0.7 0.300074
Target:  5'- gUGCCACcaccGAGGCCGAggccuuggaggugcuGGAGGUGCAGg -3'
miRNA:   3'- gGCGGUGc---UUCCGGCU---------------CCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 59858 0.7 0.31103
Target:  5'- gCCGCCACGgcGGCC-AGGucgguccGGGCAgGu -3'
miRNA:   3'- -GGCGGUGCuuCCGGcUCC-------UCCGUgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.