miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 246 0.71 0.269664
Target:  5'- gCCGCCACGAucaucgugcAGGCCGAcgGcGAGGCcuucguGCAc -3'
miRNA:   3'- -GGCGGUGCU---------UCCGGCU--C-CUCCG------UGUu -5'
19088 5' -59.5 NC_004684.1 + 3039 0.66 0.536303
Target:  5'- gCCGCacaACG-AGGCCcGGGugguGGCGCGc -3'
miRNA:   3'- -GGCGg--UGCuUCCGGcUCCu---CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 3519 0.68 0.401404
Target:  5'- aUCGCCgACGGguGGGCCGAccuGGcGGUGCAAg -3'
miRNA:   3'- -GGCGG-UGCU--UCCGGCU---CCuCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 3811 0.74 0.167863
Target:  5'- aCCGCCGCGccgcgcaggccgaugGAccugauggcagcGGCCGAGGAGGC-CGAg -3'
miRNA:   3'- -GGCGGUGC---------------UU------------CCGGCUCCUCCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 5592 0.73 0.204515
Target:  5'- cCCGCCugcCGAcgGGGCCGAGcuGGCGCGc -3'
miRNA:   3'- -GGCGGu--GCU--UCCGGCUCcuCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 6224 0.66 0.556993
Target:  5'- cCCGCCGaccuGGCCG-GGuGGCugAc -3'
miRNA:   3'- -GGCGGUgcuuCCGGCuCCuCCGugUu -5'
19088 5' -59.5 NC_004684.1 + 6491 0.76 0.125229
Target:  5'- -gGCCGagauggucgaugaacUGGAGGCCGAGGAGGUGCGc -3'
miRNA:   3'- ggCGGU---------------GCUUCCGGCUCCUCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 7994 0.66 0.505798
Target:  5'- aCGCCugGAAGGCCuacGAcgcGGuAGGCGa-- -3'
miRNA:   3'- gGCGGugCUUCCGG---CU---CC-UCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 9577 0.66 0.515888
Target:  5'- aCCGCCGgGAccAGGCCGuGGucGGGUuccCAGg -3'
miRNA:   3'- -GGCGGUgCU--UCCGGCuCC--UCCGu--GUU- -5'
19088 5' -59.5 NC_004684.1 + 10339 0.71 0.283169
Target:  5'- gCCGCCAuCGAccccGCCGGGGAGGaCAUg- -3'
miRNA:   3'- -GGCGGU-GCUuc--CGGCUCCUCC-GUGuu -5'
19088 5' -59.5 NC_004684.1 + 12443 0.67 0.47606
Target:  5'- aCCGUCugGcugcGGGCCGGGGAgcaaucgaccgaGGUACu- -3'
miRNA:   3'- -GGCGGugCu---UCCGGCUCCU------------CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 12671 0.66 0.556993
Target:  5'- gCGCuCGCugguGGAGGCCGAcGAGGC-CAu -3'
miRNA:   3'- gGCG-GUG----CUUCCGGCUcCUCCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 12719 0.68 0.410327
Target:  5'- -aGCCACGccaGAGGCCGuGGAccaGGC-CGAg -3'
miRNA:   3'- ggCGGUGC---UUCCGGCuCCU---CCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 12807 0.66 0.556993
Target:  5'- cCCGCCgACGAcGcGcCCGAGGAcGGCGg-- -3'
miRNA:   3'- -GGCGG-UGCUuC-C-GGCUCCU-CCGUguu -5'
19088 5' -59.5 NC_004684.1 + 12851 0.71 0.256683
Target:  5'- -gGUCGCGGAGGCCGAGGccGC-CAc -3'
miRNA:   3'- ggCGGUGCUUCCGGCUCCucCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 13091 0.67 0.466341
Target:  5'- gCCGCCAaGggGGCCGAu--GcGCGCAc -3'
miRNA:   3'- -GGCGGUgCuuCCGGCUccuC-CGUGUu -5'
19088 5' -59.5 NC_004684.1 + 13129 0.66 0.536303
Target:  5'- -gGCgGCGcuGGCUGAGGAgcugucccGGCGCGGu -3'
miRNA:   3'- ggCGgUGCuuCCGGCUCCU--------CCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 13368 1.07 0.000655
Target:  5'- cCCGCCACGAAGGCCGAGGAGGCACAAc -3'
miRNA:   3'- -GGCGGUGCUUCCGGCUCCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 13464 0.68 0.401404
Target:  5'- -aGCaGCuGGAGGCCGAGGAcGGCAa-- -3'
miRNA:   3'- ggCGgUG-CUUCCGGCUCCU-CCGUguu -5'
19088 5' -59.5 NC_004684.1 + 13568 0.7 0.326876
Target:  5'- uCCaGCCugGAAGcGCaCGcccgcauGGAGGCGCAAc -3'
miRNA:   3'- -GG-CGGugCUUC-CG-GCu------CCUCCGUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.