miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 5' -59.5 NC_004684.1 + 48956 0.67 0.466341
Target:  5'- aCGUCggcggGCGGgguGGCCGGGGcGGGCGCGu -3'
miRNA:   3'- gGCGG-----UGCUu--CCGGCUCC-UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 26977 0.69 0.375388
Target:  5'- gCCGCCAUccAGGCCGGugcgagcgcGGcGGGCGCGg -3'
miRNA:   3'- -GGCGGUGcuUCCGGCU---------CC-UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 59763 0.68 0.38999
Target:  5'- cCCGCCACGgcGaGCUGgcucucgaccggccAGGAGGCGa-- -3'
miRNA:   3'- -GGCGGUGCuuC-CGGC--------------UCCUCCGUguu -5'
19088 5' -59.5 NC_004684.1 + 13464 0.68 0.401404
Target:  5'- -aGCaGCuGGAGGCCGAGGAcGGCAa-- -3'
miRNA:   3'- ggCGgUG-CUUCCGGCUCCU-CCGUguu -5'
19088 5' -59.5 NC_004684.1 + 3519 0.68 0.401404
Target:  5'- aUCGCCgACGGguGGGCCGAccuGGcGGUGCAAg -3'
miRNA:   3'- -GGCGG-UGCU--UCCGGCU---CCuCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 12719 0.68 0.410327
Target:  5'- -aGCCACGccaGAGGCCGuGGAccaGGC-CGAg -3'
miRNA:   3'- ggCGGUGC---UUCCGGCuCCU---CCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 31108 0.68 0.419373
Target:  5'- aCGCCGCGcAGGCgcugGAGGAccuuggcgaccuGGCGCAc -3'
miRNA:   3'- gGCGGUGCuUCCGg---CUCCU------------CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 46284 0.68 0.437821
Target:  5'- aCGUCGCGgcGGCCGAGcGcguugcGGCGCu- -3'
miRNA:   3'- gGCGGUGCuuCCGGCUC-Cu-----CCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 15087 0.67 0.456726
Target:  5'- aUCGgCGCGguGGCCGcccuGGAGGC-CGAc -3'
miRNA:   3'- -GGCgGUGCuuCCGGCu---CCUCCGuGUU- -5'
19088 5' -59.5 NC_004684.1 + 26536 0.69 0.348921
Target:  5'- gCGCCugGGcggucAGGCCGGGGuguacgcguuccGGCGCGc -3'
miRNA:   3'- gGCGGugCU-----UCCGGCUCCu-----------CCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 40631 0.69 0.341721
Target:  5'- aCCGCCGCGc-GGCCGAcgaacuuGGGGGCc--- -3'
miRNA:   3'- -GGCGGUGCuuCCGGCU-------CCUCCGuguu -5'
19088 5' -59.5 NC_004684.1 + 59858 0.7 0.31103
Target:  5'- gCCGCCACGgcGGCC-AGGucgguccGGGCAgGu -3'
miRNA:   3'- -GGCGGUGCuuCCGGcUCC-------UCCGUgUu -5'
19088 5' -59.5 NC_004684.1 + 60631 0.75 0.149434
Target:  5'- gUCGCCcauGCGcAGGGUCGAGGGGGCAgGu -3'
miRNA:   3'- -GGCGG---UGC-UUCCGGCUCCUCCGUgUu -5'
19088 5' -59.5 NC_004684.1 + 43414 0.75 0.159246
Target:  5'- gCCGCCGCcGAacccgaggcccggcgAGGCCGAGGucggugcggcGGGCGCGg -3'
miRNA:   3'- -GGCGGUG-CU---------------UCCGGCUCC----------UCCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 54280 0.73 0.194246
Target:  5'- gCCGCCACcc-GGCCGGGGGuGCGCGc -3'
miRNA:   3'- -GGCGGUGcuuCCGGCUCCUcCGUGUu -5'
19088 5' -59.5 NC_004684.1 + 15515 0.73 0.199323
Target:  5'- gCCGCC-CG-GGGCCGGgcgcuGGAGGCGCu- -3'
miRNA:   3'- -GGCGGuGCuUCCGGCU-----CCUCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 16201 0.73 0.204515
Target:  5'- cCCGgugaugacaguUCACGGAGG-UGAGGAGGCGCGAu -3'
miRNA:   3'- -GGC-----------GGUGCUUCCgGCUCCUCCGUGUU- -5'
19088 5' -59.5 NC_004684.1 + 12851 0.71 0.256683
Target:  5'- -gGUCGCGGAGGCCGAGGccGC-CAc -3'
miRNA:   3'- ggCGGUGCUUCCGGCUCCucCGuGUu -5'
19088 5' -59.5 NC_004684.1 + 55561 0.71 0.27635
Target:  5'- gCCGCCGuggccCGguGGCCGGGGguccAGGCACc- -3'
miRNA:   3'- -GGCGGU-----GCuuCCGGCUCC----UCCGUGuu -5'
19088 5' -59.5 NC_004684.1 + 10339 0.71 0.283169
Target:  5'- gCCGCCAuCGAccccGCCGGGGAGGaCAUg- -3'
miRNA:   3'- -GGCGGU-GCUuc--CGGCUCCUCC-GUGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.