miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 3' -52.6 NC_004684.1 + 11799 1.14 0.001095
Target:  5'- gCCUUUGAUCAGCACCGCCUUGGUGCCu -3'
miRNA:   3'- -GGAAACUAGUCGUGGCGGAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 46635 0.82 0.151852
Target:  5'- uCCggugUGGaCGGCACCGCCUgcGGUGCCu -3'
miRNA:   3'- -GGaa--ACUaGUCGUGGCGGAa-CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 50068 0.81 0.188933
Target:  5'- ----cGGUCgAGCugCGCCUUGGUGUCg -3'
miRNA:   3'- ggaaaCUAG-UCGugGCGGAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 61498 0.8 0.22829
Target:  5'- ----cGAUCAGCGCCGCCgccacccggucaggcUGGUGCUg -3'
miRNA:   3'- ggaaaCUAGUCGUGGCGGa--------------ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 20298 0.76 0.341415
Target:  5'- cCCgcguccCGGCACCGCCguucUGGUGCCc -3'
miRNA:   3'- -GGaaacuaGUCGUGGCGGa---ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 25922 0.76 0.341415
Target:  5'- aCC-UUGGcCAGCACCGCCggGGUcaGCCc -3'
miRNA:   3'- -GGaAACUaGUCGUGGCGGaaCCA--CGG- -5'
19092 3' -52.6 NC_004684.1 + 66894 0.76 0.358217
Target:  5'- aCCUUcGGcgcggccuUCGGCGCgGCCUUGGcgGCCa -3'
miRNA:   3'- -GGAAaCU--------AGUCGUGgCGGAACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 51689 0.76 0.375589
Target:  5'- gCCaUUUGAcCAGCGCCGgaCCUUuaccGGUGCCg -3'
miRNA:   3'- -GG-AAACUaGUCGUGGC--GGAA----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 58674 0.76 0.384486
Target:  5'- aUCgg-GAUCAGCGCCGCCaUGGaGUCc -3'
miRNA:   3'- -GGaaaCUAGUCGUGGCGGaACCaCGG- -5'
19092 3' -52.6 NC_004684.1 + 26205 0.75 0.411999
Target:  5'- gCCUUUGAUCAGCACCGaCCc--GUuCCa -3'
miRNA:   3'- -GGAAACUAGUCGUGGC-GGaacCAcGG- -5'
19092 3' -52.6 NC_004684.1 + 24479 0.75 0.421438
Target:  5'- ----aGAUCAGCgcgcuACCGCCgggggcGGUGCCg -3'
miRNA:   3'- ggaaaCUAGUCG-----UGGCGGaa----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 27283 0.74 0.4705
Target:  5'- aCCgggcUGAUCAGCACCcuguucggugGCCUgcucGGUGCg -3'
miRNA:   3'- -GGaa--ACUAGUCGUGG----------CGGAa---CCACGg -5'
19092 3' -52.6 NC_004684.1 + 59203 0.74 0.4705
Target:  5'- --cUUGAUCAGCugCGCCUg---GCCc -3'
miRNA:   3'- ggaAACUAGUCGugGCGGAaccaCGG- -5'
19092 3' -52.6 NC_004684.1 + 50988 0.73 0.522306
Target:  5'- ----cGAaCAGCACCGUCUgGGUGCg -3'
miRNA:   3'- ggaaaCUaGUCGUGGCGGAaCCACGg -5'
19092 3' -52.6 NC_004684.1 + 53492 0.73 0.53294
Target:  5'- aUCUggccGUCGGUgAUCGCCUUGGUGUCg -3'
miRNA:   3'- -GGAaac-UAGUCG-UGGCGGAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 48391 0.73 0.53294
Target:  5'- ----cGAUCAGCACCccgGCgUUGGUGUg -3'
miRNA:   3'- ggaaaCUAGUCGUGG---CGgAACCACGg -5'
19092 3' -52.6 NC_004684.1 + 55357 0.73 0.543651
Target:  5'- uCCUgcUGGUCgAGCAUgGCCUUGGccaccGCCg -3'
miRNA:   3'- -GGAa-ACUAG-UCGUGgCGGAACCa----CGG- -5'
19092 3' -52.6 NC_004684.1 + 55433 0.72 0.554431
Target:  5'- ----cGGUguGCGCCGCa--GGUGCCa -3'
miRNA:   3'- ggaaaCUAguCGUGGCGgaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 32402 0.72 0.598094
Target:  5'- cCCg--GAUCAGCACgGCCUgcuccagggGcGUGUCg -3'
miRNA:   3'- -GGaaaCUAGUCGUGgCGGAa--------C-CACGG- -5'
19092 3' -52.6 NC_004684.1 + 9656 0.71 0.609104
Target:  5'- ---cUGcgCAGCuGCCGCCUggGcGUGCCa -3'
miRNA:   3'- ggaaACuaGUCG-UGGCGGAa-C-CACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.