miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 3' -52.6 NC_004684.1 + 2259 0.68 0.804434
Target:  5'- ---cUGAUCAGCgcggcggcgggcauuGCCGCCagccUGG-GCCa -3'
miRNA:   3'- ggaaACUAGUCG---------------UGGCGGa---ACCaCGG- -5'
19092 3' -52.6 NC_004684.1 + 3628 0.71 0.631175
Target:  5'- cCCUgcuGUCGGCcgcaaacuagugGCCGCCc-GGUGCCg -3'
miRNA:   3'- -GGAaacUAGUCG------------UGGCGGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 3794 0.66 0.886604
Target:  5'- --aUUGA-CGcCGCCGCCUUGGcgGUCa -3'
miRNA:   3'- ggaAACUaGUcGUGGCGGAACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 5875 0.67 0.846412
Target:  5'- gCCg--GG-CAGCACCaGCCUgaccgGGUGgCg -3'
miRNA:   3'- -GGaaaCUaGUCGUGG-CGGAa----CCACgG- -5'
19092 3' -52.6 NC_004684.1 + 7147 0.67 0.854935
Target:  5'- cCCg--GAaggUGGcCACCGCCUgcgGGUGCa -3'
miRNA:   3'- -GGaaaCUa--GUC-GUGGCGGAa--CCACGg -5'
19092 3' -52.6 NC_004684.1 + 9564 0.67 0.846412
Target:  5'- aCCggcGGcCAGCACCGCCg-GGaccagGCCg -3'
miRNA:   3'- -GGaaaCUaGUCGUGGCGGaaCCa----CGG- -5'
19092 3' -52.6 NC_004684.1 + 9656 0.71 0.609104
Target:  5'- ---cUGcgCAGCuGCCGCCUggGcGUGCCa -3'
miRNA:   3'- ggaaACuaGUCG-UGGCGGAa-C-CACGG- -5'
19092 3' -52.6 NC_004684.1 + 9841 0.66 0.879064
Target:  5'- gCCgucGAUCAcCGCCGCCggUGaGcUGCCg -3'
miRNA:   3'- -GGaaaCUAGUcGUGGCGGa-AC-C-ACGG- -5'
19092 3' -52.6 NC_004684.1 + 10145 0.66 0.900893
Target:  5'- aCCUcgUGcUCAGCcaGCCGCCgcug-GCCa -3'
miRNA:   3'- -GGAa-ACuAGUCG--UGGCGGaaccaCGG- -5'
19092 3' -52.6 NC_004684.1 + 11019 0.68 0.790849
Target:  5'- -----cAUCAGCACCGagc-GGUGCCg -3'
miRNA:   3'- ggaaacUAGUCGUGGCggaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 11292 0.67 0.846412
Target:  5'- ---cUGAUCGGCACCacGC--UGGUGgCCa -3'
miRNA:   3'- ggaaACUAGUCGUGG--CGgaACCAC-GG- -5'
19092 3' -52.6 NC_004684.1 + 11505 0.67 0.837663
Target:  5'- gCCUgcuggGAcuccCGGCACCGCUcggUGG-GCCu -3'
miRNA:   3'- -GGAaa---CUa---GUCGUGGCGGa--ACCaCGG- -5'
19092 3' -52.6 NC_004684.1 + 11799 1.14 0.001095
Target:  5'- gCCUUUGAUCAGCACCGCCUUGGUGCCu -3'
miRNA:   3'- -GGAAACUAGUCGUGGCGGAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 12202 0.67 0.837663
Target:  5'- -------cCAGCGCCGCCgccagcGGUGCg -3'
miRNA:   3'- ggaaacuaGUCGUGGCGGaa----CCACGg -5'
19092 3' -52.6 NC_004684.1 + 13708 0.66 0.893882
Target:  5'- gCCgaaGAUCaucccgacccaGGCGCUGUCggucGGUGCCa -3'
miRNA:   3'- -GGaaaCUAG-----------UCGUGGCGGaa--CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 15082 0.69 0.770884
Target:  5'- gCCUU--AUCGGCgcggugGCCGCCcUGGagGCCg -3'
miRNA:   3'- -GGAAacUAGUCG------UGGCGGaACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 15380 0.7 0.675244
Target:  5'- gCUggUGAUCGGCuacgagGCCGCCaucgGGgcgGCCa -3'
miRNA:   3'- gGAa-ACUAGUCG------UGGCGGaa--CCa--CGG- -5'
19092 3' -52.6 NC_004684.1 + 15950 0.66 0.879064
Target:  5'- gCCUac-AUCGGCAUgcagGCCUUGGUgagGCCg -3'
miRNA:   3'- -GGAaacUAGUCGUGg---CGGAACCA---CGG- -5'
19092 3' -52.6 NC_004684.1 + 16492 0.71 0.620134
Target:  5'- --gUUGuuuaCAGCACCGCgCUccaGGUGCCg -3'
miRNA:   3'- ggaAACua--GUCGUGGCG-GAa--CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 17677 0.66 0.891002
Target:  5'- -gUUUGAacgCcGCGCCGCCgagcgcgugcccGGUGCCc -3'
miRNA:   3'- ggAAACUa--GuCGUGGCGGaa----------CCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.