miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 3' -52.6 NC_004684.1 + 20744 0.69 0.739884
Target:  5'- gCCUgga---GGCACCGCaggcGGUGCCg -3'
miRNA:   3'- -GGAaacuagUCGUGGCGgaa-CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 19997 0.7 0.664261
Target:  5'- aCCggUGGUCcugugaccGCACCggagGCCgUGGUGCCu -3'
miRNA:   3'- -GGaaACUAGu-------CGUGG----CGGaACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 15380 0.7 0.675244
Target:  5'- gCUggUGAUCGGCuacgagGCCGCCaucgGGgcgGCCa -3'
miRNA:   3'- gGAa-ACUAGUCG------UGGCGGaa--CCa--CGG- -5'
19092 3' -52.6 NC_004684.1 + 56361 0.7 0.686186
Target:  5'- aCCagcUGAUCgcccGGCACCGCUc-GGUGCUg -3'
miRNA:   3'- -GGaa-ACUAG----UCGUGGCGGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 27735 0.7 0.686186
Target:  5'- aCCUUUGAacUC-GCGCCGUCgaugacgcaGGUGUCg -3'
miRNA:   3'- -GGAAACU--AGuCGUGGCGGaa-------CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 45735 0.7 0.70466
Target:  5'- aCCUUcGGUCAGCACCaugaccgugaccagGuUCUUGGUcacGCCg -3'
miRNA:   3'- -GGAAaCUAGUCGUGG--------------C-GGAACCA---CGG- -5'
19092 3' -52.6 NC_004684.1 + 58611 0.69 0.718652
Target:  5'- gCUUUGAUCgacGGC-CCGUggCggcUGGUGCCg -3'
miRNA:   3'- gGAAACUAG---UCGuGGCG--Ga--ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 61308 0.69 0.729317
Target:  5'- ----cGG-CAGCACCGCCgccGG-GCCg -3'
miRNA:   3'- ggaaaCUaGUCGUGGCGGaa-CCaCGG- -5'
19092 3' -52.6 NC_004684.1 + 49404 0.69 0.729317
Target:  5'- ----cGGUCAGCGCCaccaccuggaGCuuggacaugguCUUGGUGCCg -3'
miRNA:   3'- ggaaaCUAGUCGUGG----------CG-----------GAACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 24016 0.7 0.664261
Target:  5'- gCCgacgUGAUCGGUuCCGgCaaGGUGCCc -3'
miRNA:   3'- -GGaa--ACUAGUCGuGGCgGaaCCACGG- -5'
19092 3' -52.6 NC_004684.1 + 40282 0.71 0.653249
Target:  5'- cCCgUUGA-CcGCGCCGUCgUUGGUGUCg -3'
miRNA:   3'- -GGaAACUaGuCGUGGCGG-AACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 46125 0.71 0.653249
Target:  5'- aCCUUcugGAUCA-CAUCGCCcaggccgaUGGUGCCc -3'
miRNA:   3'- -GGAAa--CUAGUcGUGGCGGa-------ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 66894 0.76 0.358217
Target:  5'- aCCUUcGGcgcggccuUCGGCGCgGCCUUGGcgGCCa -3'
miRNA:   3'- -GGAAaCU--------AGUCGUGgCGGAACCa-CGG- -5'
19092 3' -52.6 NC_004684.1 + 51689 0.76 0.375589
Target:  5'- gCCaUUUGAcCAGCGCCGgaCCUUuaccGGUGCCg -3'
miRNA:   3'- -GG-AAACUaGUCGUGGC--GGAA----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 24479 0.75 0.421438
Target:  5'- ----aGAUCAGCgcgcuACCGCCgggggcGGUGCCg -3'
miRNA:   3'- ggaaaCUAGUCG-----UGGCGGaa----CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 27283 0.74 0.4705
Target:  5'- aCCgggcUGAUCAGCACCcuguucggugGCCUgcucGGUGCg -3'
miRNA:   3'- -GGaa--ACUAGUCGUGG----------CGGAa---CCACGg -5'
19092 3' -52.6 NC_004684.1 + 48391 0.73 0.53294
Target:  5'- ----cGAUCAGCACCccgGCgUUGGUGUg -3'
miRNA:   3'- ggaaaCUAGUCGUGG---CGgAACCACGg -5'
19092 3' -52.6 NC_004684.1 + 16492 0.71 0.620134
Target:  5'- --gUUGuuuaCAGCACCGCgCUccaGGUGCCg -3'
miRNA:   3'- ggaAACua--GUCGUGGCG-GAa--CCACGG- -5'
19092 3' -52.6 NC_004684.1 + 42609 0.71 0.631175
Target:  5'- aCCUUcGAccCGGCaccucccccgccGCCGCCggugcUGGUGCCg -3'
miRNA:   3'- -GGAAaCUa-GUCG------------UGGCGGa----ACCACGG- -5'
19092 3' -52.6 NC_004684.1 + 40439 0.71 0.653249
Target:  5'- gCC-UUGGUCAGCGgUGCCcaGGcgGCCg -3'
miRNA:   3'- -GGaAACUAGUCGUgGCGGaaCCa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.