miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 11833 1.08 0.000126
Target:  5'- cCGGCCACCGGGCCACGGCGGCCAGCGg -3'
miRNA:   3'- -GCCGGUGGCCCGGUGCCGCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 55559 0.84 0.010606
Target:  5'- uGGCCGCCGuGGCC-CGGUGGCCGGgGg -3'
miRNA:   3'- gCCGGUGGC-CCGGuGCCGCCGGUCgC- -5'
19092 5' -67.3 NC_004684.1 + 1924 0.8 0.020283
Target:  5'- cCGGCCuGCCGGGCCugguaccggcgcACGGUGGCCGcGCGc -3'
miRNA:   3'- -GCCGG-UGGCCCGG------------UGCCGCCGGU-CGC- -5'
19092 5' -67.3 NC_004684.1 + 47350 0.8 0.021406
Target:  5'- uGGCCACCaGGCCACGGUaGGacCCGGCGg -3'
miRNA:   3'- gCCGGUGGcCCGGUGCCG-CC--GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 55304 0.8 0.021638
Target:  5'- uGGCCGCCgcgcGGGCCAgcaccucgucgcgcuCGGCGGCCAGgCGa -3'
miRNA:   3'- gCCGGUGG----CCCGGU---------------GCCGCCGGUC-GC- -5'
19092 5' -67.3 NC_004684.1 + 7330 0.8 0.023206
Target:  5'- gGGCCGCCGGGCCGCGcGCcacgagugcgaGGCCuGGCa -3'
miRNA:   3'- gCCGGUGGCCCGGUGC-CG-----------CCGG-UCGc -5'
19092 5' -67.3 NC_004684.1 + 23968 0.79 0.027266
Target:  5'- uCGGCCucGCCGGGCCucggguuCGGCGG-CGGCGa -3'
miRNA:   3'- -GCCGG--UGGCCCGGu------GCCGCCgGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 51510 0.78 0.02877
Target:  5'- gCGGCUGCacaGGGCCGCuGGCGGCCAcGUGc -3'
miRNA:   3'- -GCCGGUGg--CCCGGUG-CCGCCGGU-CGC- -5'
19092 5' -67.3 NC_004684.1 + 866 0.78 0.029552
Target:  5'- cCGuGcCCGCCGGGCCGCgcugaaGGCGGCCcGCGa -3'
miRNA:   3'- -GC-C-GGUGGCCCGGUG------CCGCCGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 47149 0.78 0.031095
Target:  5'- gCGGCC-CCGGuGCCcaggagcaccguaGCGGCGGCCAGgGc -3'
miRNA:   3'- -GCCGGuGGCC-CGG-------------UGCCGCCGGUCgC- -5'
19092 5' -67.3 NC_004684.1 + 49700 0.77 0.034702
Target:  5'- aGGgCACCGGGCacgcgcuCGGCGGCgCGGCGu -3'
miRNA:   3'- gCCgGUGGCCCGgu-----GCCGCCG-GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 26319 0.77 0.037498
Target:  5'- aGGCCGCCGGGCCgccgauugccgacGCGGUGcGCuCGGCc -3'
miRNA:   3'- gCCGGUGGCCCGG-------------UGCCGC-CG-GUCGc -5'
19092 5' -67.3 NC_004684.1 + 29731 0.77 0.037498
Target:  5'- uGGCgCACCGGGUCgaugccugaccggGCGGCcauGGCCAGCGc -3'
miRNA:   3'- gCCG-GUGGCCCGG-------------UGCCG---CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 54208 0.77 0.037599
Target:  5'- gCGGCCugCucgGGGCCGaGGuCGGCCAGCa -3'
miRNA:   3'- -GCCGGugG---CCCGGUgCC-GCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 17109 0.77 0.037599
Target:  5'- -cGCCGUCGGGCCugGcGCuGGCCAGCGa -3'
miRNA:   3'- gcCGGUGGCCCGGugC-CG-CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 9061 0.77 0.03966
Target:  5'- gGGCCACCGGGCgCGCcaugacccGGCGucGCCGGUGa -3'
miRNA:   3'- gCCGGUGGCCCG-GUG--------CCGC--CGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 40954 0.77 0.03966
Target:  5'- cCGuaCACCGGGCCAcCGGCGGCgaaccccgcugcCAGCGc -3'
miRNA:   3'- -GCcgGUGGCCCGGU-GCCGCCG------------GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 58319 0.77 0.03966
Target:  5'- cCGGCgaCGCCGGGUCAUGGCGcGcCCGGUGg -3'
miRNA:   3'- -GCCG--GUGGCCCGGUGCCGC-C-GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 1807 0.77 0.03966
Target:  5'- gCGGCUcaugACCGaGGCCAUGGCGGCUgaccuGCGg -3'
miRNA:   3'- -GCCGG----UGGC-CCGGUGCCGCCGGu----CGC- -5'
19092 5' -67.3 NC_004684.1 + 57038 0.76 0.045309
Target:  5'- uCGGUCACggUGGGCCACGGCa-CCAGCGc -3'
miRNA:   3'- -GCCGGUG--GCCCGGUGCCGccGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.