miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 26569 0.74 0.065622
Target:  5'- cCGGCgCGCCcuGGCgCGCGGCGGUguGCGc -3'
miRNA:   3'- -GCCG-GUGGc-CCG-GUGCCGCCGguCGC- -5'
19092 5' -67.3 NC_004684.1 + 15388 0.75 0.05313
Target:  5'- uCGGCUA-CGaGGCCGCcaucggGGCGGCCAGCa -3'
miRNA:   3'- -GCCGGUgGC-CCGGUG------CCGCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 49181 0.75 0.05313
Target:  5'- uCGGCgGCgGcGGCgGCGGCGGCCuGCu -3'
miRNA:   3'- -GCCGgUGgC-CCGgUGCCGCCGGuCGc -5'
19092 5' -67.3 NC_004684.1 + 10497 0.75 0.05313
Target:  5'- cCGGCCgacgcACUGGGCCGCcGaCGGUCAGCGc -3'
miRNA:   3'- -GCCGG-----UGGCCCGGUGcC-GCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 40460 0.75 0.054411
Target:  5'- gCGGCCGCCugcucggGGGUCuCGGCGGUCuGCGc -3'
miRNA:   3'- -GCCGGUGG-------CCCGGuGCCGCCGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 24784 0.75 0.054555
Target:  5'- gGGCCGCUGGucgauacgGCCAaGGCGGUCGGCa -3'
miRNA:   3'- gCCGGUGGCC--------CGGUgCCGCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 67082 0.75 0.057518
Target:  5'- gCGGgCGuuG-GCCuCGGCGGCCAGCGa -3'
miRNA:   3'- -GCCgGUggCcCGGuGCCGCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 19038 0.75 0.057518
Target:  5'- cCGGCgGCCGGGCaggucaugaagUGCGGCaGGCUGGCGu -3'
miRNA:   3'- -GCCGgUGGCCCG-----------GUGCCG-CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 62891 0.74 0.060636
Target:  5'- cCGGCCauGCCGuuGCCACGGCGGgCCAGg- -3'
miRNA:   3'- -GCCGG--UGGCc-CGGUGCCGCC-GGUCgc -5'
19092 5' -67.3 NC_004684.1 + 2440 0.75 0.050387
Target:  5'- aGGCCgacAUCGcccGCCugGGCGGCCAGCu -3'
miRNA:   3'- gCCGG---UGGCc--CGGugCCGCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 22168 0.76 0.047782
Target:  5'- aGGagCACCgcaGGGCCACGGCGG-CGGCGa -3'
miRNA:   3'- gCCg-GUGG---CCCGGUGCCGCCgGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 61317 0.76 0.047656
Target:  5'- -cGCCGCCGGGCCGCcgcccucGGCGGCguaGGUGg -3'
miRNA:   3'- gcCGGUGGCCCGGUG-------CCGCCGg--UCGC- -5'
19092 5' -67.3 NC_004684.1 + 47350 0.8 0.021406
Target:  5'- uGGCCACCaGGCCACGGUaGGacCCGGCGg -3'
miRNA:   3'- gCCGGUGGcCCGGUGCCG-CC--GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 47149 0.78 0.031095
Target:  5'- gCGGCC-CCGGuGCCcaggagcaccguaGCGGCGGCCAGgGc -3'
miRNA:   3'- -GCCGGuGGCC-CGG-------------UGCCGCCGGUCgC- -5'
19092 5' -67.3 NC_004684.1 + 49700 0.77 0.034702
Target:  5'- aGGgCACCGGGCacgcgcuCGGCGGCgCGGCGu -3'
miRNA:   3'- gCCgGUGGCCCGgu-----GCCGCCG-GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 26319 0.77 0.037498
Target:  5'- aGGCCGCCGGGCCgccgauugccgacGCGGUGcGCuCGGCc -3'
miRNA:   3'- gCCGGUGGCCCGG-------------UGCCGC-CG-GUCGc -5'
19092 5' -67.3 NC_004684.1 + 54208 0.77 0.037599
Target:  5'- gCGGCCugCucgGGGCCGaGGuCGGCCAGCa -3'
miRNA:   3'- -GCCGGugG---CCCGGUgCC-GCCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 58319 0.77 0.03966
Target:  5'- cCGGCgaCGCCGGGUCAUGGCGcGcCCGGUGg -3'
miRNA:   3'- -GCCG--GUGGCCCGGUGCCGC-C-GGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 57038 0.76 0.045309
Target:  5'- uCGGUCACggUGGGCCACGGCa-CCAGCGc -3'
miRNA:   3'- -GCCGGUG--GCCCGGUGCCGccGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 25391 0.76 0.04653
Target:  5'- -cGCCGCCGcGCacaGCGGCGGCCAGUa -3'
miRNA:   3'- gcCGGUGGCcCGg--UGCCGCCGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.