miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 169 0.66 0.261007
Target:  5'- cCGGUgACCGGGuuggucgggaccaCCACcaaGGUGGCCcuGGCa -3'
miRNA:   3'- -GCCGgUGGCCC-------------GGUG---CCGCCGG--UCGc -5'
19092 5' -67.3 NC_004684.1 + 310 0.68 0.191767
Target:  5'- uGGCCGCCGaGGCCAacgcccgcacCGGguaCGGCgcgaAGCGu -3'
miRNA:   3'- gCCGGUGGC-CCGGU----------GCC---GCCGg---UCGC- -5'
19092 5' -67.3 NC_004684.1 + 464 0.68 0.186676
Target:  5'- uGGCCguggacaACCGGGCCAgcgaGGuCGG-CAGCa -3'
miRNA:   3'- gCCGG-------UGGCCCGGUg---CC-GCCgGUCGc -5'
19092 5' -67.3 NC_004684.1 + 484 0.67 0.196501
Target:  5'- uGGCCGCCaaGGCCGCGccgaaGGCC-GCGc -3'
miRNA:   3'- gCCGGUGGc-CCGGUGCcg---CCGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 521 0.73 0.069164
Target:  5'- -cGCCACCGGcGCUgACGuGCuGGCCAGCGc -3'
miRNA:   3'- gcCGGUGGCC-CGG-UGC-CG-CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 692 0.66 0.261616
Target:  5'- uCGGCC-CCGaGGUCAgccgccggUGGaCGGCCuGGCGc -3'
miRNA:   3'- -GCCGGuGGC-CCGGU--------GCC-GCCGG-UCGC- -5'
19092 5' -67.3 NC_004684.1 + 736 0.71 0.104869
Target:  5'- cCGGUgACCGGGCCGCcGCcgaGGCCAucGUGg -3'
miRNA:   3'- -GCCGgUGGCCCGGUGcCG---CCGGU--CGC- -5'
19092 5' -67.3 NC_004684.1 + 766 0.67 0.223858
Target:  5'- nGGCCACCaaGGCCGCaGGCaccaagcuGGCCAagaaccaggucgugcGCGa -3'
miRNA:   3'- gCCGGUGGc-CCGGUG-CCG--------CCGGU---------------CGC- -5'
19092 5' -67.3 NC_004684.1 + 866 0.78 0.029552
Target:  5'- cCGuGcCCGCCGGGCCGCgcugaaGGCGGCCcGCGa -3'
miRNA:   3'- -GC-C-GGUGGCCCGGUG------CCGCCGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 922 0.68 0.17382
Target:  5'- -cGCCACCGGGUgGCGGCGuggagacaacGCC-GCc -3'
miRNA:   3'- gcCGGUGGCCCGgUGCCGC----------CGGuCGc -5'
19092 5' -67.3 NC_004684.1 + 959 0.73 0.080924
Target:  5'- gGGCCugCGGGUCAUuggcgacuccggGGCguucucGGCCAGCa -3'
miRNA:   3'- gCCGGugGCCCGGUG------------CCG------CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 1245 0.68 0.182599
Target:  5'- uCGGUCGCCcGGCCcCGGCccagaugcgcuGGCUGGUGg -3'
miRNA:   3'- -GCCGGUGGcCCGGuGCCG-----------CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 1249 0.66 0.249068
Target:  5'- cCGGUCACUGGaCCAacgacacCGGCGaccacuucGCCAGCa -3'
miRNA:   3'- -GCCGGUGGCCcGGU-------GCCGC--------CGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 1381 0.66 0.255577
Target:  5'- uGGCCgacGCCaaGGCCGCcGUugcacuGGCCAGCGa -3'
miRNA:   3'- gCCGG---UGGc-CCGGUGcCG------CCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 1401 0.69 0.145995
Target:  5'- gCGGCUACCGGuaCG-GGCGGCUgAGCc -3'
miRNA:   3'- -GCCGGUGGCCcgGUgCCGCCGG-UCGc -5'
19092 5' -67.3 NC_004684.1 + 1423 0.74 0.06737
Target:  5'- aGGCCuGCCGGGCCAaGGUccaGGCCgAGCu -3'
miRNA:   3'- gCCGG-UGGCCCGGUgCCG---CCGG-UCGc -5'
19092 5' -67.3 NC_004684.1 + 1462 0.74 0.060476
Target:  5'- uGGUCgagACCGGGCCggacgugcccgguGCGGCGGCCcuGGUGg -3'
miRNA:   3'- gCCGG---UGGCCCGG-------------UGCCGCCGG--UCGC- -5'
19092 5' -67.3 NC_004684.1 + 1611 0.74 0.060158
Target:  5'- uCGGUCGCCGugcgcgcgcccaccGGCgCGCGGCGGCCAacgcccGCGa -3'
miRNA:   3'- -GCCGGUGGC--------------CCG-GUGCCGCCGGU------CGC- -5'
19092 5' -67.3 NC_004684.1 + 1633 0.68 0.191767
Target:  5'- cCGGCgcaACCGGGUacCGGCgcccaaguggGGCCAGCu -3'
miRNA:   3'- -GCCGg--UGGCCCGguGCCG----------CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 1807 0.77 0.03966
Target:  5'- gCGGCUcaugACCGaGGCCAUGGCGGCUgaccuGCGg -3'
miRNA:   3'- -GCCGG----UGGC-CCGGUGCCGCCGGu----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.