miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 3' -54.6 NC_004684.1 + 11541 1.09 0.001633
Target:  5'- gCGUCGACGUCGCACUGCACGCAGUACc -3'
miRNA:   3'- -GCAGCUGCAGCGUGACGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 3097 0.77 0.231435
Target:  5'- --aCGACGgccagggCGCACUGCGCGCGGUc- -3'
miRNA:   3'- gcaGCUGCa------GCGUGACGUGCGUCAug -5'
19094 3' -54.6 NC_004684.1 + 42168 0.76 0.262978
Target:  5'- gGUCGagaGCGcCGCACUGCGCGguGaGCa -3'
miRNA:   3'- gCAGC---UGCaGCGUGACGUGCguCaUG- -5'
19094 3' -54.6 NC_004684.1 + 66191 0.76 0.276542
Target:  5'- aGUCGACGcCGCGCuUGC-CGUAGUAg -3'
miRNA:   3'- gCAGCUGCaGCGUG-ACGuGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 64638 0.76 0.290659
Target:  5'- cCGUCGGCGUCGUggcgcaccGCgaugucgGCGCGCAGcgGCa -3'
miRNA:   3'- -GCAGCUGCAGCG--------UGa------CGUGCGUCa-UG- -5'
19094 3' -54.6 NC_004684.1 + 60743 0.75 0.312882
Target:  5'- uGUCGACacCGCGCUGCACGuCAGggaGCa -3'
miRNA:   3'- gCAGCUGcaGCGUGACGUGC-GUCa--UG- -5'
19094 3' -54.6 NC_004684.1 + 4448 0.74 0.352729
Target:  5'- uCGUCGGCG-CGCGCcGCGCGCuGGUcgGCu -3'
miRNA:   3'- -GCAGCUGCaGCGUGaCGUGCG-UCA--UG- -5'
19094 3' -54.6 NC_004684.1 + 50206 0.74 0.360273
Target:  5'- cCGUCGGCGUCGUGCcaggUGCcgaacacGCGCAGgUACu -3'
miRNA:   3'- -GCAGCUGCAGCGUG----ACG-------UGCGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 57488 0.74 0.361118
Target:  5'- cCGUCGACaa-GCGCcGCACGCAGgUGCc -3'
miRNA:   3'- -GCAGCUGcagCGUGaCGUGCGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 51248 0.74 0.361118
Target:  5'- gGUCGAUGcCGCAC-GCGCGCAugaucggcucGUACa -3'
miRNA:   3'- gCAGCUGCaGCGUGaCGUGCGU----------CAUG- -5'
19094 3' -54.6 NC_004684.1 + 33088 0.74 0.361118
Target:  5'- uGUcCGGCGUgGCGCUGCcgACGCAG-GCg -3'
miRNA:   3'- gCA-GCUGCAgCGUGACG--UGCGUCaUG- -5'
19094 3' -54.6 NC_004684.1 + 25602 0.73 0.396038
Target:  5'- aCGUCGGCGUCgGCACcugGC-CGCGuccGUACg -3'
miRNA:   3'- -GCAGCUGCAG-CGUGa--CGuGCGU---CAUG- -5'
19094 3' -54.6 NC_004684.1 + 47030 0.72 0.452312
Target:  5'- aCGUCGGgGUgGC-CUGCGCGgugaCGGUGCa -3'
miRNA:   3'- -GCAGCUgCAgCGuGACGUGC----GUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 64088 0.72 0.462112
Target:  5'- -cUCGuCGUCGCGCU-CGCGCuGUGCc -3'
miRNA:   3'- gcAGCuGCAGCGUGAcGUGCGuCAUG- -5'
19094 3' -54.6 NC_004684.1 + 25265 0.72 0.472022
Target:  5'- gCGUCGGCGUUGaaCACcaugucGCGCGCGGUGa -3'
miRNA:   3'- -GCAGCUGCAGC--GUGa-----CGUGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 61483 0.72 0.482038
Target:  5'- aGUCGAUGUCGcCGC-GCAgGCGGcgGCg -3'
miRNA:   3'- gCAGCUGCAGC-GUGaCGUgCGUCa-UG- -5'
19094 3' -54.6 NC_004684.1 + 65877 0.72 0.482038
Target:  5'- uCGUCGcCGUUgaGCGCgGCGCGCAGguugGCc -3'
miRNA:   3'- -GCAGCuGCAG--CGUGaCGUGCGUCa---UG- -5'
19094 3' -54.6 NC_004684.1 + 1537 0.71 0.492156
Target:  5'- aCG-CGACccUGCGCUcGCAUGCGGUGCa -3'
miRNA:   3'- -GCaGCUGcaGCGUGA-CGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 42738 0.71 0.502371
Target:  5'- cCGUCGGCGaagUGCAgUGCGCGcCGGaACg -3'
miRNA:   3'- -GCAGCUGCa--GCGUgACGUGC-GUCaUG- -5'
19094 3' -54.6 NC_004684.1 + 1136 0.71 0.544088
Target:  5'- --aCGACGcCGCGCUgaGCACGCugaucGUGCa -3'
miRNA:   3'- gcaGCUGCaGCGUGA--CGUGCGu----CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.