miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 3' -54.6 NC_004684.1 + 429 0.7 0.554701
Target:  5'- gGUCGACGUgGacgaggacacCGCUGCGCGCAucGUGg -3'
miRNA:   3'- gCAGCUGCAgC----------GUGACGUGCGU--CAUg -5'
19094 3' -54.6 NC_004684.1 + 1136 0.71 0.544088
Target:  5'- --aCGACGcCGCGCUgaGCACGCugaucGUGCa -3'
miRNA:   3'- gcaGCUGCaGCGUGA--CGUGCGu----CAUG- -5'
19094 3' -54.6 NC_004684.1 + 1537 0.71 0.492156
Target:  5'- aCG-CGACccUGCGCUcGCAUGCGGUGCa -3'
miRNA:   3'- -GCaGCUGcaGCGUGA-CGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 1613 0.69 0.651968
Target:  5'- gGUCGcCGUgCGCGCgcccaccgGCGCGCGGcgGCc -3'
miRNA:   3'- gCAGCuGCA-GCGUGa-------CGUGCGUCa-UG- -5'
19094 3' -54.6 NC_004684.1 + 3097 0.77 0.231435
Target:  5'- --aCGACGgccagggCGCACUGCGCGCGGUc- -3'
miRNA:   3'- gcaGCUGCa------GCGUGACGUGCGUCAug -5'
19094 3' -54.6 NC_004684.1 + 4448 0.74 0.352729
Target:  5'- uCGUCGGCG-CGCGCcGCGCGCuGGUcgGCu -3'
miRNA:   3'- -GCAGCUGCaGCGUGaCGUGCG-UCA--UG- -5'
19094 3' -54.6 NC_004684.1 + 5176 0.66 0.816104
Target:  5'- uGUCGAgGUgGCGCUGgUugGcCAGgacgGCa -3'
miRNA:   3'- gCAGCUgCAgCGUGAC-GugC-GUCa---UG- -5'
19094 3' -54.6 NC_004684.1 + 5386 0.68 0.695131
Target:  5'- cCGUCccCGUCGCgAUUGUGCGCggcgGGUGCg -3'
miRNA:   3'- -GCAGcuGCAGCG-UGACGUGCG----UCAUG- -5'
19094 3' -54.6 NC_004684.1 + 7841 0.69 0.641107
Target:  5'- gGUgCGACaacggCGCGC-GCugGCGGUGCa -3'
miRNA:   3'- gCA-GCUGca---GCGUGaCGugCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 9303 0.66 0.80681
Target:  5'- -cUCGGCG-CGCucccggucgaGCUGCACGguGcGCa -3'
miRNA:   3'- gcAGCUGCaGCG----------UGACGUGCguCaUG- -5'
19094 3' -54.6 NC_004684.1 + 11541 1.09 0.001633
Target:  5'- gCGUCGACGUCGCACUGCACGCAGUACc -3'
miRNA:   3'- -GCAGCUGCAGCGUGACGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 15821 0.69 0.651968
Target:  5'- gGUCGcCGcCGCGCaGCGCGCAcugGCg -3'
miRNA:   3'- gCAGCuGCaGCGUGaCGUGCGUca-UG- -5'
19094 3' -54.6 NC_004684.1 + 19169 0.68 0.716398
Target:  5'- aCGUCGACaUCGCGgUGUugucuccccCGUGGUGCg -3'
miRNA:   3'- -GCAGCUGcAGCGUgACGu--------GCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 22248 0.66 0.80681
Target:  5'- cCGUCGACuUCGC-CgagGcCugGguGUACg -3'
miRNA:   3'- -GCAGCUGcAGCGuGa--C-GugCguCAUG- -5'
19094 3' -54.6 NC_004684.1 + 22707 0.67 0.748689
Target:  5'- aGUCGACGccagcgacaucggcaUCGCGCcGCcgcagcagcgggugACGCAGUGg -3'
miRNA:   3'- gCAGCUGC---------------AGCGUGaCG--------------UGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 23736 0.69 0.651968
Target:  5'- uCGcUGGCGgCGCACUGCucgguGCGCAGUuCg -3'
miRNA:   3'- -GCaGCUGCaGCGUGACG-----UGCGUCAuG- -5'
19094 3' -54.6 NC_004684.1 + 24646 0.7 0.565374
Target:  5'- gCGUucCGGCG-CGCACUGCACuucgccgacgGCGGUGa -3'
miRNA:   3'- -GCA--GCUGCaGCGUGACGUG----------CGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 25190 0.66 0.796381
Target:  5'- aCGUCGGCcaccagcuccacgGcC-CACUGCucaccGCGCAGUGCg -3'
miRNA:   3'- -GCAGCUG-------------CaGcGUGACG-----UGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 25265 0.72 0.472022
Target:  5'- gCGUCGGCGUUGaaCACcaugucGCGCGCGGUGa -3'
miRNA:   3'- -GCAGCUGCAGC--GUGa-----CGUGCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 25602 0.73 0.396038
Target:  5'- aCGUCGGCGUCgGCACcugGC-CGCGuccGUACg -3'
miRNA:   3'- -GCAGCUGCAG-CGUGa--CGuGCGU---CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.