miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 3' -54.6 NC_004684.1 + 32055 0.67 0.737341
Target:  5'- aGUCGGCGUugaCGCACacgGCgACGCAccGCg -3'
miRNA:   3'- gCAGCUGCA---GCGUGa--CG-UGCGUcaUG- -5'
19094 3' -54.6 NC_004684.1 + 46677 0.7 0.597678
Target:  5'- gCGUUGGCGUUGCgguggcgguGCggugGCGCGCccuGUGCg -3'
miRNA:   3'- -GCAGCUGCAGCG---------UGa---CGUGCGu--CAUG- -5'
19094 3' -54.6 NC_004684.1 + 23736 0.69 0.651968
Target:  5'- uCGcUGGCGgCGCACUGCucgguGCGCAGUuCg -3'
miRNA:   3'- -GCaGCUGCaGCGUGACG-----UGCGUCAuG- -5'
19094 3' -54.6 NC_004684.1 + 27849 0.68 0.684403
Target:  5'- --cCGAgCG-CGCugUGCACGCAGg-- -3'
miRNA:   3'- gcaGCU-GCaGCGugACGUGCGUCaug -5'
19094 3' -54.6 NC_004684.1 + 36179 0.68 0.715342
Target:  5'- uCGUUGGCGaCGCGCUgGCACcucagccguggauGCAGcUGCg -3'
miRNA:   3'- -GCAGCUGCaGCGUGA-CGUG-------------CGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 19169 0.68 0.716398
Target:  5'- aCGUCGACaUCGCGgUGUugucuccccCGUGGUGCg -3'
miRNA:   3'- -GCAGCUGcAGCGUgACGu--------GCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 44909 0.68 0.716398
Target:  5'- aCGUUGGCGUCGg--UGCGCGCcgGGUAg -3'
miRNA:   3'- -GCAGCUGCAGCgugACGUGCG--UCAUg -5'
19094 3' -54.6 NC_004684.1 + 61809 0.68 0.716398
Target:  5'- cCGUCGGCaggcggGUCGCcUUGCAgGCGGUu- -3'
miRNA:   3'- -GCAGCUG------CAGCGuGACGUgCGUCAug -5'
19094 3' -54.6 NC_004684.1 + 55330 0.68 0.720616
Target:  5'- uCGcCGACGgcuggcaggugagccUgGCGC-GCAUGCAGUACa -3'
miRNA:   3'- -GCaGCUGC---------------AgCGUGaCGUGCGUCAUG- -5'
19094 3' -54.6 NC_004684.1 + 47952 0.7 0.5761
Target:  5'- --gUGGCGUCgGCACgGCugGCGGUGu -3'
miRNA:   3'- gcaGCUGCAG-CGUGaCGugCGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 24646 0.7 0.565374
Target:  5'- gCGUucCGGCG-CGCACUGCACuucgccgacgGCGGUGa -3'
miRNA:   3'- -GCA--GCUGCaGCGUGACGUG----------CGUCAUg -5'
19094 3' -54.6 NC_004684.1 + 429 0.7 0.554701
Target:  5'- gGUCGACGUgGacgaggacacCGCUGCGCGCAucGUGg -3'
miRNA:   3'- gCAGCUGCAgC----------GUGACGUGCGU--CAUg -5'
19094 3' -54.6 NC_004684.1 + 64638 0.76 0.290659
Target:  5'- cCGUCGGCGUCGUggcgcaccGCgaugucgGCGCGCAGcgGCa -3'
miRNA:   3'- -GCAGCUGCAGCG--------UGa------CGUGCGUCa-UG- -5'
19094 3' -54.6 NC_004684.1 + 50206 0.74 0.360273
Target:  5'- cCGUCGGCGUCGUGCcaggUGCcgaacacGCGCAGgUACu -3'
miRNA:   3'- -GCAGCUGCAGCGUG----ACG-------UGCGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 33088 0.74 0.361118
Target:  5'- uGUcCGGCGUgGCGCUGCcgACGCAG-GCg -3'
miRNA:   3'- gCA-GCUGCAgCGUGACG--UGCGUCaUG- -5'
19094 3' -54.6 NC_004684.1 + 51248 0.74 0.361118
Target:  5'- gGUCGAUGcCGCAC-GCGCGCAugaucggcucGUACa -3'
miRNA:   3'- gCAGCUGCaGCGUGaCGUGCGU----------CAUG- -5'
19094 3' -54.6 NC_004684.1 + 57488 0.74 0.361118
Target:  5'- cCGUCGACaa-GCGCcGCACGCAGgUGCc -3'
miRNA:   3'- -GCAGCUGcagCGUGaCGUGCGUC-AUG- -5'
19094 3' -54.6 NC_004684.1 + 64088 0.72 0.462112
Target:  5'- -cUCGuCGUCGCGCU-CGCGCuGUGCc -3'
miRNA:   3'- gcAGCuGCAGCGUGAcGUGCGuCAUG- -5'
19094 3' -54.6 NC_004684.1 + 65877 0.72 0.482038
Target:  5'- uCGUCGcCGUUgaGCGCgGCGCGCAGguugGCc -3'
miRNA:   3'- -GCAGCuGCAG--CGUGaCGUGCGUCa---UG- -5'
19094 3' -54.6 NC_004684.1 + 61483 0.72 0.482038
Target:  5'- aGUCGAUGUCGcCGC-GCAgGCGGcgGCg -3'
miRNA:   3'- gCAGCUGCAGC-GUGaCGUgCGUCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.