miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 5' -62 NC_004684.1 + 11575 1.08 0.000379
Target:  5'- cCGGCACCCCGUGCUCGCACGCGCUCAc -3'
miRNA:   3'- -GCCGUGGGGCACGAGCGUGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 38260 0.78 0.070075
Target:  5'- uCGGCACCaCCa-GCUCGCACGUGCUg- -3'
miRNA:   3'- -GCCGUGG-GGcaCGAGCGUGCGCGAgu -5'
19094 5' -62 NC_004684.1 + 57187 0.77 0.082475
Target:  5'- aGGCACCUCcagcGCUCGCugGCGCUgGg -3'
miRNA:   3'- gCCGUGGGGca--CGAGCGugCGCGAgU- -5'
19094 5' -62 NC_004684.1 + 12767 0.74 0.12323
Target:  5'- --aCACCCCGUcCUCGCGCGCGCa-- -3'
miRNA:   3'- gccGUGGGGCAcGAGCGUGCGCGagu -5'
19094 5' -62 NC_004684.1 + 40373 0.74 0.133372
Target:  5'- cCGGCACCCgGUGCcuggcuguugaUCGCcgcgcccgcCGCGCUCGc -3'
miRNA:   3'- -GCCGUGGGgCACG-----------AGCGu--------GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 40533 0.74 0.133372
Target:  5'- gCGcCGCCUCcUGCUCGCugGUGCUCGa -3'
miRNA:   3'- -GCcGUGGGGcACGAGCGugCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 39537 0.73 0.144278
Target:  5'- cCGGCACUCC-UGCgUGCacaGCGCGCUCGg -3'
miRNA:   3'- -GCCGUGGGGcACGaGCG---UGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 10379 0.73 0.14809
Target:  5'- aGcGCACCCCGauggcgcGCUCGUccccggcggugACGCGCUCGa -3'
miRNA:   3'- gC-CGUGGGGCa------CGAGCG-----------UGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 51763 0.72 0.177438
Target:  5'- aGGCGCUugUCGUGCUCGCGCuCGCg-- -3'
miRNA:   3'- gCCGUGG--GGCACGAGCGUGcGCGagu -5'
19094 5' -62 NC_004684.1 + 1491 0.72 0.186727
Target:  5'- gCGGCgGCCCUGgugGCcaaccugCGCGcCGCGCUCAa -3'
miRNA:   3'- -GCCG-UGGGGCa--CGa------GCGU-GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 39663 0.71 0.206595
Target:  5'- cCGGCcUCCgCGUGcCUCGUgcuCGCGCUCGg -3'
miRNA:   3'- -GCCGuGGG-GCAC-GAGCGu--GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 3445 0.71 0.21184
Target:  5'- gCGGCACCaCgGUGUUCGCcgucuCGCccaaGCUCAg -3'
miRNA:   3'- -GCCGUGG-GgCACGAGCGu----GCG----CGAGU- -5'
19094 5' -62 NC_004684.1 + 46806 0.71 0.21558
Target:  5'- gCGGUAguCCCCGUgGCgugCGCACacugucggcaaccgGCGCUCAg -3'
miRNA:   3'- -GCCGU--GGGGCA-CGa--GCGUG--------------CGCGAGU- -5'
19094 5' -62 NC_004684.1 + 42237 0.7 0.222674
Target:  5'- uCGGCACCCa-UGCccuuuuucuugUUGCGCGCGCUg- -3'
miRNA:   3'- -GCCGUGGGgcACG-----------AGCGUGCGCGAgu -5'
19094 5' -62 NC_004684.1 + 526 0.7 0.228266
Target:  5'- cCGGCGCUgaCGUGCUgGCcaGCGCGgUCGa -3'
miRNA:   3'- -GCCGUGGg-GCACGAgCG--UGCGCgAGU- -5'
19094 5' -62 NC_004684.1 + 37080 0.7 0.238044
Target:  5'- cCGGUGCCCCGacCUCGUcgucguagccgauaGCGCcGCUCAg -3'
miRNA:   3'- -GCCGUGGGGCacGAGCG--------------UGCG-CGAGU- -5'
19094 5' -62 NC_004684.1 + 13084 0.69 0.264343
Target:  5'- gGuGCGCCCCG-GUUCGCGCgGUGCa-- -3'
miRNA:   3'- gC-CGUGGGGCaCGAGCGUG-CGCGagu -5'
19094 5' -62 NC_004684.1 + 1528 0.69 0.264343
Target:  5'- aCGGCgacgacgcgACCCUGcGCUCGCAUGCGgUgCAc -3'
miRNA:   3'- -GCCG---------UGGGGCaCGAGCGUGCGCgA-GU- -5'
19094 5' -62 NC_004684.1 + 31349 0.69 0.277358
Target:  5'- aGGUGCCCgGUGUcUGCACgGCGgUCAg -3'
miRNA:   3'- gCCGUGGGgCACGaGCGUG-CGCgAGU- -5'
19094 5' -62 NC_004684.1 + 5089 0.69 0.290878
Target:  5'- uGGCACCCCGaagaccuaGCagGCAagGUGCUCAc -3'
miRNA:   3'- gCCGUGGGGCa-------CGagCGUg-CGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.