miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 5' -62 NC_004684.1 + 526 0.7 0.228266
Target:  5'- cCGGCGCUgaCGUGCUgGCcaGCGCGgUCGa -3'
miRNA:   3'- -GCCGUGGg-GCACGAgCG--UGCGCgAGU- -5'
19094 5' -62 NC_004684.1 + 1054 0.67 0.366168
Target:  5'- gCGGCACCggUUGUGCUgGCugGCGg--- -3'
miRNA:   3'- -GCCGUGG--GGCACGAgCGugCGCgagu -5'
19094 5' -62 NC_004684.1 + 1491 0.72 0.186727
Target:  5'- gCGGCgGCCCUGgugGCcaaccugCGCGcCGCGCUCAa -3'
miRNA:   3'- -GCCG-UGGGGCa--CGa------GCGU-GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 1528 0.69 0.264343
Target:  5'- aCGGCgacgacgcgACCCUGcGCUCGCAUGCGgUgCAc -3'
miRNA:   3'- -GCCG---------UGGGGCaCGAGCGUGCGCgA-GU- -5'
19094 5' -62 NC_004684.1 + 1605 0.66 0.41738
Target:  5'- aCGGCAUCggucgCCGUGCgcgCGCccaccgGCGCGCg-- -3'
miRNA:   3'- -GCCGUGG-----GGCACGa--GCG------UGCGCGagu -5'
19094 5' -62 NC_004684.1 + 3412 0.68 0.319455
Target:  5'- aCGGCACCCUG-GCacCGCugGcCGC-CAc -3'
miRNA:   3'- -GCCGUGGGGCaCGa-GCGugC-GCGaGU- -5'
19094 5' -62 NC_004684.1 + 3445 0.71 0.21184
Target:  5'- gCGGCACCaCgGUGUUCGCcgucuCGCccaaGCUCAg -3'
miRNA:   3'- -GCCGUGG-GgCACGAGCGu----GCG----CGAGU- -5'
19094 5' -62 NC_004684.1 + 5089 0.69 0.290878
Target:  5'- uGGCACCCCGaagaccuaGCagGCAagGUGCUCAc -3'
miRNA:   3'- gCCGUGGGGCa-------CGagCGUg-CGCGAGU- -5'
19094 5' -62 NC_004684.1 + 8291 0.67 0.366168
Target:  5'- aCGGCaACCCgGUGCcggagUgGUugGCGCUg- -3'
miRNA:   3'- -GCCG-UGGGgCACG-----AgCGugCGCGAgu -5'
19094 5' -62 NC_004684.1 + 8645 0.66 0.399826
Target:  5'- uCGGCACCCCc-GC-CGUACaGCaGCUCc -3'
miRNA:   3'- -GCCGUGGGGcaCGaGCGUG-CG-CGAGu -5'
19094 5' -62 NC_004684.1 + 8725 0.66 0.399826
Target:  5'- gCGGCGCugauCCCGaUGUUCGCcgcCGCGCcCGg -3'
miRNA:   3'- -GCCGUG----GGGC-ACGAGCGu--GCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 9288 0.66 0.41738
Target:  5'- gCGG-ACCCgGccaUGCUCG-GCGCGCUCc -3'
miRNA:   3'- -GCCgUGGGgC---ACGAGCgUGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 10379 0.73 0.14809
Target:  5'- aGcGCACCCCGauggcgcGCUCGUccccggcggugACGCGCUCGa -3'
miRNA:   3'- gC-CGUGGGGCa------CGAGCG-----------UGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 10659 0.68 0.30491
Target:  5'- cCGGU-UCCCGUGCUgGCGCG-GCaUCAg -3'
miRNA:   3'- -GCCGuGGGGCACGAgCGUGCgCG-AGU- -5'
19094 5' -62 NC_004684.1 + 11575 1.08 0.000379
Target:  5'- cCGGCACCCCGUGCUCGCACGCGCUCAc -3'
miRNA:   3'- -GCCGUGGGGCACGAGCGUGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 12499 0.67 0.350087
Target:  5'- gGGcCGCCUCGUGC-CGCACGUuguGCa-- -3'
miRNA:   3'- gCC-GUGGGGCACGaGCGUGCG---CGagu -5'
19094 5' -62 NC_004684.1 + 12767 0.74 0.12323
Target:  5'- --aCACCCCGUcCUCGCGCGCGCa-- -3'
miRNA:   3'- gccGUGGGGCAcGAGCGUGCGCGagu -5'
19094 5' -62 NC_004684.1 + 13084 0.69 0.264343
Target:  5'- gGuGCGCCCCG-GUUCGCGCgGUGCa-- -3'
miRNA:   3'- gC-CGUGGGGCaCGAGCGUG-CGCGagu -5'
19094 5' -62 NC_004684.1 + 13723 0.68 0.342237
Target:  5'- cCGGCcCaCCCGUGUgCGCcUGCGCUUc -3'
miRNA:   3'- -GCCGuG-GGGCACGaGCGuGCGCGAGu -5'
19094 5' -62 NC_004684.1 + 13776 0.67 0.391228
Target:  5'- gGGUGUCCgG-GC-CGCGCGUGCUCAa -3'
miRNA:   3'- gCCGUGGGgCaCGaGCGUGCGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.