miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19094 5' -62 NC_004684.1 + 8725 0.66 0.399826
Target:  5'- gCGGCGCugauCCCGaUGUUCGCcgcCGCGCcCGg -3'
miRNA:   3'- -GCCGUG----GGGC-ACGAGCGu--GCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 8291 0.67 0.366168
Target:  5'- aCGGCaACCCgGUGCcggagUgGUugGCGCUg- -3'
miRNA:   3'- -GCCG-UGGGgCACG-----AgCGugCGCGAgu -5'
19094 5' -62 NC_004684.1 + 53649 0.67 0.366168
Target:  5'- gGaGCACCCCGUcgGUgaagCGCAgGCGCa-- -3'
miRNA:   3'- gC-CGUGGGGCA--CGa---GCGUgCGCGagu -5'
19094 5' -62 NC_004684.1 + 28785 0.67 0.374397
Target:  5'- gCGGCAUgccaCCCG-GUUCcgaGCugGUGCUCGa -3'
miRNA:   3'- -GCCGUG----GGGCaCGAG---CGugCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 16793 0.67 0.382751
Target:  5'- gCGGCGCgUCGUGUggUGgGCGCGC-CAu -3'
miRNA:   3'- -GCCGUGgGGCACGa-GCgUGCGCGaGU- -5'
19094 5' -62 NC_004684.1 + 38957 0.67 0.391228
Target:  5'- cCGGCACCaagcaccgcaCCGaggUGUUCGCGCGCGg--- -3'
miRNA:   3'- -GCCGUGG----------GGC---ACGAGCGUGCGCgagu -5'
19094 5' -62 NC_004684.1 + 25078 0.67 0.391228
Target:  5'- cCGGCAacguggccgaccUCCCG-GCagGCAUGuCGCUCAa -3'
miRNA:   3'- -GCCGU------------GGGGCaCGagCGUGC-GCGAGU- -5'
19094 5' -62 NC_004684.1 + 42484 0.67 0.391228
Target:  5'- uCGGCAUCCUGUccaacgaccagGCcaaCGCgaucaacgGCGCGCUCAc -3'
miRNA:   3'- -GCCGUGGGGCA-----------CGa--GCG--------UGCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 8645 0.66 0.399826
Target:  5'- uCGGCACCCCc-GC-CGUACaGCaGCUCc -3'
miRNA:   3'- -GCCGUGGGGcaCGaGCGUG-CG-CGAGu -5'
19094 5' -62 NC_004684.1 + 1054 0.67 0.366168
Target:  5'- gCGGCACCggUUGUGCUgGCugGCGg--- -3'
miRNA:   3'- -GCCGUGG--GGCACGAgCGugCGCgagu -5'
19094 5' -62 NC_004684.1 + 22704 0.68 0.343016
Target:  5'- gCGGCGCaggacguggccaaggCCGUgGCUgGCACGCGCg-- -3'
miRNA:   3'- -GCCGUGg--------------GGCA-CGAgCGUGCGCGagu -5'
19094 5' -62 NC_004684.1 + 59947 0.68 0.342237
Target:  5'- aCGuGCGCgUUGUGCUgGCG-GCGCUCGu -3'
miRNA:   3'- -GC-CGUGgGGCACGAgCGUgCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 39663 0.71 0.206595
Target:  5'- cCGGCcUCCgCGUGcCUCGUgcuCGCGCUCGg -3'
miRNA:   3'- -GCCGuGGG-GCAC-GAGCGu--GCGCGAGU- -5'
19094 5' -62 NC_004684.1 + 3445 0.71 0.21184
Target:  5'- gCGGCACCaCgGUGUUCGCcgucuCGCccaaGCUCAg -3'
miRNA:   3'- -GCCGUGG-GgCACGAGCGu----GCG----CGAGU- -5'
19094 5' -62 NC_004684.1 + 46806 0.71 0.21558
Target:  5'- gCGGUAguCCCCGUgGCgugCGCACacugucggcaaccgGCGCUCAg -3'
miRNA:   3'- -GCCGU--GGGGCA-CGa--GCGUG--------------CGCGAGU- -5'
19094 5' -62 NC_004684.1 + 13084 0.69 0.264343
Target:  5'- gGuGCGCCCCG-GUUCGCGCgGUGCa-- -3'
miRNA:   3'- gC-CGUGGGGCaCGAGCGUG-CGCGagu -5'
19094 5' -62 NC_004684.1 + 5089 0.69 0.290878
Target:  5'- uGGCACCCCGaagaccuaGCagGCAagGUGCUCAc -3'
miRNA:   3'- gCCGUGGGGCa-------CGagCGUg-CGCGAGU- -5'
19094 5' -62 NC_004684.1 + 59295 0.69 0.29783
Target:  5'- aGGCcguuGCCCCuUGCUCaCGgGCGCUCc -3'
miRNA:   3'- gCCG----UGGGGcACGAGcGUgCGCGAGu -5'
19094 5' -62 NC_004684.1 + 3412 0.68 0.319455
Target:  5'- aCGGCACCCUG-GCacCGCugGcCGC-CAc -3'
miRNA:   3'- -GCCGUGGGGCaCGa-GCGugC-GCGaGU- -5'
19094 5' -62 NC_004684.1 + 59977 0.68 0.319455
Target:  5'- -cGCACCCgGaccuUGC-CGCACGCGCcgCAg -3'
miRNA:   3'- gcCGUGGGgC----ACGaGCGUGCGCGa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.