miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 11170 1.09 0.000263
Target:  5'- cUGACCGCCUGCAUGCGCCGCUCCCACa -3'
miRNA:   3'- -ACUGGCGGACGUACGCGGCGAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 46414 0.76 0.089596
Target:  5'- gGGCCGaCCUGCGc-CGCCGCUCCgACc -3'
miRNA:   3'- aCUGGC-GGACGUacGCGGCGAGGgUG- -5'
19095 5' -61.6 NC_004684.1 + 57943 0.75 0.097239
Target:  5'- cGACCGCCUGCG-GUGCuCGCUgCgGCu -3'
miRNA:   3'- aCUGGCGGACGUaCGCG-GCGAgGgUG- -5'
19095 5' -61.6 NC_004684.1 + 29570 0.74 0.120733
Target:  5'- aUGACCGCUgUGUAgggcGCGCCGUgcCCCACa -3'
miRNA:   3'- -ACUGGCGG-ACGUa---CGCGGCGa-GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 19343 0.73 0.149418
Target:  5'- -aACCGCCauccGCAUGCGCCGCcugaUCgCGCa -3'
miRNA:   3'- acUGGCGGa---CGUACGCGGCG----AGgGUG- -5'
19095 5' -61.6 NC_004684.1 + 57554 0.72 0.165981
Target:  5'- cGACCGCCgaGC-UGCGCCGgUuggccgacaucgCCCGCa -3'
miRNA:   3'- aCUGGCGGa-CGuACGCGGCgA------------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 51036 0.72 0.165981
Target:  5'- cGGCCGCCaGCuUGUcggccagcgccaGCCGCUCCuCGCu -3'
miRNA:   3'- aCUGGCGGaCGuACG------------CGGCGAGG-GUG- -5'
19095 5' -61.6 NC_004684.1 + 48476 0.72 0.170371
Target:  5'- gGGCCugGUCUG-AUGCGCCGCgacCCCGCc -3'
miRNA:   3'- aCUGG--CGGACgUACGCGGCGa--GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 33660 0.72 0.172157
Target:  5'- cUGGCCGCgCUGCGUcGaguaguucgggccacCGCCGCUgCCGCu -3'
miRNA:   3'- -ACUGGCG-GACGUA-C---------------GCGGCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 59544 0.71 0.188988
Target:  5'- cUGcACCGCCaGCGcGCGCCGUUgUCGCa -3'
miRNA:   3'- -AC-UGGCGGaCGUaCGCGGCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 9638 0.71 0.188988
Target:  5'- aGACCGCCUGaccgcucacUGCGCaGCUgCCGCc -3'
miRNA:   3'- aCUGGCGGACgu-------ACGCGgCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 3221 0.71 0.193913
Target:  5'- cGugCGCCUGgaagagGUGCGCCGCaUCCUg- -3'
miRNA:   3'- aCugGCGGACg-----UACGCGGCG-AGGGug -5'
19095 5' -61.6 NC_004684.1 + 23932 0.71 0.204102
Target:  5'- -uGCCGCC-GCAccUGCuGCCGC-CCCGCc -3'
miRNA:   3'- acUGGCGGaCGU--ACG-CGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 3532 0.69 0.249587
Target:  5'- aGGCCGCCacgcgcgcacgUggcaccgacaGCGUGCGCCGCgccaUCCGCa -3'
miRNA:   3'- aCUGGCGG-----------A----------CGUACGCGGCGa---GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 44469 0.69 0.255827
Target:  5'- cUGGCCaCCUGCGUGCGC-GUggaCCACc -3'
miRNA:   3'- -ACUGGcGGACGUACGCGgCGag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 21620 0.69 0.262195
Target:  5'- cGACCGCCUGgagGUGCGCCuGCcaaCCGa -3'
miRNA:   3'- aCUGGCGGACg--UACGCGG-CGag-GGUg -5'
19095 5' -61.6 NC_004684.1 + 41014 0.69 0.275316
Target:  5'- aGAUCGCCgccgacguUGCcgGUGCCGUUgCCCGa -3'
miRNA:   3'- aCUGGCGG--------ACGuaCGCGGCGA-GGGUg -5'
19095 5' -61.6 NC_004684.1 + 33277 0.69 0.282071
Target:  5'- gUGACCGCCacgcgUGCAgucUGCGCacucgcguuguuCGCgCCCGCc -3'
miRNA:   3'- -ACUGGCGG-----ACGU---ACGCG------------GCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 9533 0.68 0.288957
Target:  5'- cGACCGCgaGCugGUGCGCCGgUUggagccggugcgCCGCg -3'
miRNA:   3'- aCUGGCGgaCG--UACGCGGCgAG------------GGUG- -5'
19095 5' -61.6 NC_004684.1 + 57510 0.68 0.295267
Target:  5'- cGGCgGCCUGCuccUGCGCgGCgucgggaUCCgGCg -3'
miRNA:   3'- aCUGgCGGACGu--ACGCGgCG-------AGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.