miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 34144 0.66 0.390453
Target:  5'- -cGCCGCCUcggGCGgcacgGUGCUGCUCaCCGg -3'
miRNA:   3'- acUGGCGGA---CGUa----CGCGGCGAG-GGUg -5'
19095 5' -61.6 NC_004684.1 + 53591 0.67 0.348795
Target:  5'- aGGCgGUCgGacaGUGCGCCGCUCUugagCACg -3'
miRNA:   3'- aCUGgCGGaCg--UACGCGGCGAGG----GUG- -5'
19095 5' -61.6 NC_004684.1 + 57092 0.67 0.348795
Target:  5'- gUGGCCGCCcGCAUGCaCUGgaCCUggaGCg -3'
miRNA:   3'- -ACUGGCGGaCGUACGcGGCgaGGG---UG- -5'
19095 5' -61.6 NC_004684.1 + 796 0.67 0.348795
Target:  5'- aUGGCCcucaCCUGCAccuCGCCGUggcggCCCGCa -3'
miRNA:   3'- -ACUGGc---GGACGUac-GCGGCGa----GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 22271 0.67 0.348795
Target:  5'- gGACCGCCUgGCG-GCgGCCaaggCCCGCg -3'
miRNA:   3'- aCUGGCGGA-CGUaCG-CGGcga-GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 18871 0.67 0.365071
Target:  5'- gUGGCCGCacucaggGCAccaGCGCgGCUCcuCCACg -3'
miRNA:   3'- -ACUGGCGga-----CGUa--CGCGgCGAG--GGUG- -5'
19095 5' -61.6 NC_004684.1 + 11679 0.67 0.365071
Target:  5'- gUGACCGCCgcGCAaGCaGCUGCgcaCUACg -3'
miRNA:   3'- -ACUGGCGGa-CGUaCG-CGGCGag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 18354 0.67 0.373404
Target:  5'- cGACCGgCgGCGcgGUGCCGCUCgacaUCACc -3'
miRNA:   3'- aCUGGCgGaCGUa-CGCGGCGAG----GGUG- -5'
19095 5' -61.6 NC_004684.1 + 24120 0.67 0.373404
Target:  5'- cGGCaCGCCgacGCA-GCaGCCGUaCCCGCu -3'
miRNA:   3'- aCUG-GCGGa--CGUaCG-CGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 66518 0.67 0.340853
Target:  5'- gGGCCGCCUuCA-GCGCgGC-CCgGCg -3'
miRNA:   3'- aCUGGCGGAcGUaCGCGgCGaGGgUG- -5'
19095 5' -61.6 NC_004684.1 + 4212 0.68 0.325364
Target:  5'- -cACCGCCagccacgacUGCAUGCGCCuGCgcggCgCGCa -3'
miRNA:   3'- acUGGCGG---------ACGUACGCGG-CGa---GgGUG- -5'
19095 5' -61.6 NC_004684.1 + 21334 0.68 0.310405
Target:  5'- cGACCGCCgcauccGUGUGCGCUGa--CCAUg -3'
miRNA:   3'- aCUGGCGGa-----CGUACGCGGCgagGGUG- -5'
19095 5' -61.6 NC_004684.1 + 57554 0.72 0.165981
Target:  5'- cGACCGCCgaGC-UGCGCCGgUuggccgacaucgCCCGCa -3'
miRNA:   3'- aCUGGCGGa-CGuACGCGGCgA------------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 59544 0.71 0.188988
Target:  5'- cUGcACCGCCaGCGcGCGCCGUUgUCGCa -3'
miRNA:   3'- -AC-UGGCGGaCGUaCGCGGCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 44469 0.69 0.255827
Target:  5'- cUGGCCaCCUGCGUGCGC-GUggaCCACc -3'
miRNA:   3'- -ACUGGcGGACGUACGCGgCGag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 21620 0.69 0.262195
Target:  5'- cGACCGCCUGgagGUGCGCCuGCcaaCCGa -3'
miRNA:   3'- aCUGGCGGACg--UACGCGG-CGag-GGUg -5'
19095 5' -61.6 NC_004684.1 + 9533 0.68 0.288957
Target:  5'- cGACCGCgaGCugGUGCGCCGgUUggagccggugcgCCGCg -3'
miRNA:   3'- aCUGGCGgaCG--UACGCGGCgAG------------GGUG- -5'
19095 5' -61.6 NC_004684.1 + 16609 0.68 0.295975
Target:  5'- gUGGCCuCCUGCAUGCucaCCGCgCUCAUc -3'
miRNA:   3'- -ACUGGcGGACGUACGc--GGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 51124 0.68 0.300965
Target:  5'- aUGGCCGCgaGCAucugccgacgaaucUGCGCCGCcgacUCCUc- -3'
miRNA:   3'- -ACUGGCGgaCGU--------------ACGCGGCG----AGGGug -5'
19095 5' -61.6 NC_004684.1 + 15878 0.68 0.303123
Target:  5'- gUGGCCGCCagcgGCccuGUGCaGCCGCagggcgUCCCGg -3'
miRNA:   3'- -ACUGGCGGa---CG---UACG-CGGCG------AGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.