miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19095 5' -61.6 NC_004684.1 + 483 0.66 0.426036
Target:  5'- gUGGCCGCCaagGCc-GCGCCGaaggCCGCg -3'
miRNA:   3'- -ACUGGCGGa--CGuaCGCGGCgag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 796 0.67 0.348795
Target:  5'- aUGGCCcucaCCUGCAccuCGCCGUggcggCCCGCa -3'
miRNA:   3'- -ACUGGc---GGACGUac-GCGGCGa----GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 1274 0.67 0.365071
Target:  5'- cGACCacuucGCCaGCAcGCGUCGCgUCCGCg -3'
miRNA:   3'- aCUGG-----CGGaCGUaCGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 1576 0.66 0.408002
Target:  5'- gGugCGCCUGUcUGCGCUGagcgCCaGCg -3'
miRNA:   3'- aCugGCGGACGuACGCGGCga--GGgUG- -5'
19095 5' -61.6 NC_004684.1 + 3221 0.71 0.193913
Target:  5'- cGugCGCCUGgaagagGUGCGCCGCaUCCUg- -3'
miRNA:   3'- aCugGCGGACg-----UACGCGGCG-AGGGug -5'
19095 5' -61.6 NC_004684.1 + 3532 0.69 0.249587
Target:  5'- aGGCCGCCacgcgcgcacgUggcaccgacaGCGUGCGCCGCgccaUCCGCa -3'
miRNA:   3'- aCUGGCGG-----------A----------CGUACGCGGCGa---GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 4212 0.68 0.325364
Target:  5'- -cACCGCCagccacgacUGCAUGCGCCuGCgcggCgCGCa -3'
miRNA:   3'- acUGGCGG---------ACGUACGCGG-CGa---GgGUG- -5'
19095 5' -61.6 NC_004684.1 + 5575 0.68 0.325364
Target:  5'- -aACCGCCUGCAagGCGacCCGCcugCCgACg -3'
miRNA:   3'- acUGGCGGACGUa-CGC--GGCGa--GGgUG- -5'
19095 5' -61.6 NC_004684.1 + 8265 0.68 0.325364
Target:  5'- --cCCGCCa-CGUGCGCCGCgaCCUGCg -3'
miRNA:   3'- acuGGCGGacGUACGCGGCGa-GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 9290 0.67 0.348795
Target:  5'- gGACCcgGCCaUGCucgGCG-CGCUCCCGg -3'
miRNA:   3'- aCUGG--CGG-ACGua-CGCgGCGAGGGUg -5'
19095 5' -61.6 NC_004684.1 + 9533 0.68 0.288957
Target:  5'- cGACCGCgaGCugGUGCGCCGgUUggagccggugcgCCGCg -3'
miRNA:   3'- aCUGGCGgaCG--UACGCGGCgAG------------GGUG- -5'
19095 5' -61.6 NC_004684.1 + 9638 0.71 0.188988
Target:  5'- aGACCGCCUGaccgcucacUGCGCaGCUgCCGCc -3'
miRNA:   3'- aCUGGCGGACgu-------ACGCGgCGAgGGUG- -5'
19095 5' -61.6 NC_004684.1 + 10002 0.66 0.41696
Target:  5'- cUGGCCGCCUGgAUaGCGacugguaaCCGCgcaaaagacCCCGCc -3'
miRNA:   3'- -ACUGGCGGACgUA-CGC--------GGCGa--------GGGUG- -5'
19095 5' -61.6 NC_004684.1 + 11170 1.09 0.000263
Target:  5'- cUGACCGCCUGCAUGCGCCGCUCCCACa -3'
miRNA:   3'- -ACUGGCGGACGUACGCGGCGAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 11679 0.67 0.365071
Target:  5'- gUGACCGCCgcGCAaGCaGCUGCgcaCUACg -3'
miRNA:   3'- -ACUGGCGGa-CGUaCG-CGGCGag-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 12068 0.66 0.390453
Target:  5'- cUGGCCGCCgagcGCGacgagGUGCUGg-CCCGCg -3'
miRNA:   3'- -ACUGGCGGa---CGUa----CGCGGCgaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 12941 0.66 0.408002
Target:  5'- -cGCCGCCgucgGCAccccCGgUGCUCCCGCc -3'
miRNA:   3'- acUGGCGGa---CGUac--GCgGCGAGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 13084 0.66 0.416058
Target:  5'- gGugCGCCccgguucgcgcggUGCA--CGCCGC-CCCACc -3'
miRNA:   3'- aCugGCGG-------------ACGUacGCGGCGaGGGUG- -5'
19095 5' -61.6 NC_004684.1 + 13200 0.66 0.43523
Target:  5'- aGGCCGCCgGUuUGCGCCuGCUgaUCAUu -3'
miRNA:   3'- aCUGGCGGaCGuACGCGG-CGAg-GGUG- -5'
19095 5' -61.6 NC_004684.1 + 15878 0.68 0.303123
Target:  5'- gUGGCCGCCagcgGCccuGUGCaGCCGCagggcgUCCCGg -3'
miRNA:   3'- -ACUGGCGGa---CG---UACG-CGGCG------AGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.