miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 3' -56.9 NC_004684.1 + 10868 1.09 0.001071
Target:  5'- uCGGAGAACUCGACCUCACCGACGCCGg -3'
miRNA:   3'- -GCCUCUUGAGCUGGAGUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 22239 0.81 0.098042
Target:  5'- uGGAGGACgccgUCGACUUCGCCGAgGCCu -3'
miRNA:   3'- gCCUCUUG----AGCUGGAGUGGCUgCGGc -5'
19096 3' -56.9 NC_004684.1 + 31205 0.8 0.121771
Target:  5'- gGGccuGGAAgaCGACCUgGCCGACGCCGg -3'
miRNA:   3'- gCC---UCUUgaGCUGGAgUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 34361 0.76 0.205987
Target:  5'- gGGAGAACaUGACCgCACCGACaCCGa -3'
miRNA:   3'- gCCUCUUGaGCUGGaGUGGCUGcGGC- -5'
19096 3' -56.9 NC_004684.1 + 64601 0.74 0.284723
Target:  5'- uCGGcGAACUCGAaCUCGCUGGCGUCc -3'
miRNA:   3'- -GCCuCUUGAGCUgGAGUGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 62128 0.74 0.298758
Target:  5'- uCGGuGAACUCGuugcacGCCUCGCCG-UGCCc -3'
miRNA:   3'- -GCCuCUUGAGC------UGGAGUGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 5680 0.73 0.320804
Target:  5'- uCGGAGGuggccgggGCcCGGCCUgcccacggCACCGACGCCa -3'
miRNA:   3'- -GCCUCU--------UGaGCUGGA--------GUGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 25510 0.73 0.328418
Target:  5'- cCGGcGAGCggcuguucUCGACC--GCCGACGCCGg -3'
miRNA:   3'- -GCCuCUUG--------AGCUGGagUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 13307 0.73 0.336166
Target:  5'- uCGGAGcAGCUguaCGACUUCugCGACguGCCGg -3'
miRNA:   3'- -GCCUC-UUGA---GCUGGAGugGCUG--CGGC- -5'
19096 3' -56.9 NC_004684.1 + 18941 0.73 0.336166
Target:  5'- aGGAGAACUCGGCC--ACCGAgGUgGc -3'
miRNA:   3'- gCCUCUUGAGCUGGagUGGCUgCGgC- -5'
19096 3' -56.9 NC_004684.1 + 31720 0.73 0.336166
Target:  5'- gGcGAGAGCUUGAUCUCGCCGuccuuUGUCGa -3'
miRNA:   3'- gC-CUCUUGAGCUGGAGUGGCu----GCGGC- -5'
19096 3' -56.9 NC_004684.1 + 23754 0.73 0.352057
Target:  5'- uGGuccGAcgaacucaccgcGCUCGGCCaCACCGugGCCGg -3'
miRNA:   3'- gCCu--CU------------UGAGCUGGaGUGGCugCGGC- -5'
19096 3' -56.9 NC_004684.1 + 49723 0.72 0.363494
Target:  5'- aCGGGGAACUCGGCCaUGCUGGCuugucuccugcuaguGCCa -3'
miRNA:   3'- -GCCUCUUGAGCUGGaGUGGCUG---------------CGGc -5'
19096 3' -56.9 NC_004684.1 + 2554 0.72 0.368474
Target:  5'- uGGAGcGCgcggaGGCCuUCGCCGAgGCCGg -3'
miRNA:   3'- gCCUCuUGag---CUGG-AGUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 36719 0.72 0.374343
Target:  5'- cCGGGGGuuaccGCaUCGACCUguucgccgucccggCGCUGACGCCGc -3'
miRNA:   3'- -GCCUCU-----UG-AGCUGGA--------------GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 19297 0.72 0.402849
Target:  5'- aGGGcGACaUCGugCUUgcccgGCCGACGCCGg -3'
miRNA:   3'- gCCUcUUG-AGCugGAG-----UGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 49027 0.71 0.411755
Target:  5'- cCGGuGAugUCGAgCggCACCG-CGCCGc -3'
miRNA:   3'- -GCCuCUugAGCUgGa-GUGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 61417 0.71 0.411755
Target:  5'- cCGG-GAcuucGCUCGGCCggucgcUCACCGGCGCgGc -3'
miRNA:   3'- -GCCuCU----UGAGCUGG------AGUGGCUGCGgC- -5'
19096 3' -56.9 NC_004684.1 + 9277 0.71 0.429927
Target:  5'- uGGccGAugUCGAgUUC-CCGACGCCGa -3'
miRNA:   3'- gCCu-CUugAGCUgGAGuGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 9142 0.71 0.439188
Target:  5'- uGGucaAGAuGCUCGGCCUgGCCGACGacaCCGu -3'
miRNA:   3'- gCC---UCU-UGAGCUGGAgUGGCUGC---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.