miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 3' -56.9 NC_004684.1 + 1661 0.67 0.673673
Target:  5'- uGGGGccAGCUCGACUcccuggaACCGACGCa- -3'
miRNA:   3'- gCCUC--UUGAGCUGGag-----UGGCUGCGgc -5'
19096 3' -56.9 NC_004684.1 + 2493 0.69 0.55696
Target:  5'- uGGAGcuGCUaugagggCGGCCUCAaCGACGCCc -3'
miRNA:   3'- gCCUCu-UGA-------GCUGGAGUgGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 2554 0.72 0.368474
Target:  5'- uGGAGcGCgcggaGGCCuUCGCCGAgGCCGg -3'
miRNA:   3'- gCCUCuUGag---CUGG-AGUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 5259 0.68 0.620924
Target:  5'- aCGGcGAgGCgugcaaCGAgUUCACCGACGCCa -3'
miRNA:   3'- -GCCuCU-UGa-----GCUgGAGUGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 5367 0.7 0.477328
Target:  5'- -cGAGGAC-CGGCguCUCACCGgaACGCCGa -3'
miRNA:   3'- gcCUCUUGaGCUG--GAGUGGC--UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 5680 0.73 0.320804
Target:  5'- uCGGAGGuggccgggGCcCGGCCUgcccacggCACCGACGCCa -3'
miRNA:   3'- -GCCUCU--------UGaGCUGGA--------GUGGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 7754 0.69 0.53738
Target:  5'- uGGGGGACcUGACCgggccgaccccCACCGugGUCGa -3'
miRNA:   3'- gCCUCUUGaGCUGGa----------GUGGCugCGGC- -5'
19096 3' -56.9 NC_004684.1 + 8846 0.68 0.57883
Target:  5'- aGGAGAaggccGCUCGcAUCUCcaacGCCGcCGCCa -3'
miRNA:   3'- gCCUCU-----UGAGC-UGGAG----UGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 9142 0.71 0.439188
Target:  5'- uGGucaAGAuGCUCGGCCUgGCCGACGacaCCGu -3'
miRNA:   3'- gCC---UCU-UGAGCUGGAgUGGCUGC---GGC- -5'
19096 3' -56.9 NC_004684.1 + 9227 0.66 0.725509
Target:  5'- gGGccAGGACcCGaACCUgcUGCCGACGCUGg -3'
miRNA:   3'- gCC--UCUUGaGC-UGGA--GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 9277 0.71 0.429927
Target:  5'- uGGccGAugUCGAgUUC-CCGACGCCGa -3'
miRNA:   3'- gCCu-CUugAGCUgGAGuGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 9824 0.69 0.52717
Target:  5'- gCGGGcGAugUCGGCCa-ACCGGCGCa- -3'
miRNA:   3'- -GCCU-CUugAGCUGGagUGGCUGCGgc -5'
19096 3' -56.9 NC_004684.1 + 9858 0.67 0.652617
Target:  5'- cCGGuGAGCUgCcGCCggaUC-CCGACGCCGc -3'
miRNA:   3'- -GCCuCUUGA-GcUGG---AGuGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 10130 0.69 0.517034
Target:  5'- uGGAGAACgccgcUGACCUCgugcucagccaGCCGcCGCUGg -3'
miRNA:   3'- gCCUCUUGa----GCUGGAG-----------UGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 10652 0.67 0.642058
Target:  5'- aGGAgcugcccaguGAGgUCGACCggcaCACCGaACGCCu -3'
miRNA:   3'- gCCU----------CUUgAGCUGGa---GUGGC-UGCGGc -5'
19096 3' -56.9 NC_004684.1 + 10868 1.09 0.001071
Target:  5'- uCGGAGAACUCGACCUCACCGACGCCGg -3'
miRNA:   3'- -GCCUCUUGAGCUGGAGUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 12054 0.66 0.725509
Target:  5'- aGGAGGcgGCUCG-CCUgGCCGccgaGCGCg- -3'
miRNA:   3'- gCCUCU--UGAGCuGGAgUGGC----UGCGgc -5'
19096 3' -56.9 NC_004684.1 + 12855 0.66 0.735659
Target:  5'- gCGGAGGccgaGGCCgccacCGCCGAgGCCGc -3'
miRNA:   3'- -GCCUCUugagCUGGa----GUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 12887 0.68 0.57883
Target:  5'- cCGGuGAGCgcgguaCGAgCUUACCGGCGuuGu -3'
miRNA:   3'- -GCCuCUUGa-----GCUgGAGUGGCUGCggC- -5'
19096 3' -56.9 NC_004684.1 + 12889 0.68 0.607202
Target:  5'- cCGGGGAGC-CuGCgCUCGCCGccagcggugccgguGCGCCGu -3'
miRNA:   3'- -GCCUCUUGaGcUG-GAGUGGC--------------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.