miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19096 3' -56.9 NC_004684.1 + 55534 0.69 0.567347
Target:  5'- gCGGAcaaccacGAACUCGcGCCgcuggcCGCCGugGCCc -3'
miRNA:   3'- -GCCU-------CUUGAGC-UGGa-----GUGGCugCGGc -5'
19096 3' -56.9 NC_004684.1 + 5367 0.7 0.477328
Target:  5'- -cGAGGAC-CGGCguCUCACCGgaACGCCGa -3'
miRNA:   3'- gcCUCUUGaGCUG--GAGUGGC--UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 41777 0.7 0.497002
Target:  5'- uGGGcguacGGACgCGGCCaggUGCCGACGCCGa -3'
miRNA:   3'- gCCU-----CUUGaGCUGGa--GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 34809 0.7 0.497002
Target:  5'- gCGGAGAACcUGACC--ACCGACGaCGg -3'
miRNA:   3'- -GCCUCUUGaGCUGGagUGGCUGCgGC- -5'
19096 3' -56.9 NC_004684.1 + 13884 0.7 0.506976
Target:  5'- aGGAGggUgUCGACaccaaggcgaUCACCGACgGCCa -3'
miRNA:   3'- gCCUCuuG-AGCUGg---------AGUGGCUG-CGGc -5'
19096 3' -56.9 NC_004684.1 + 10130 0.69 0.517034
Target:  5'- uGGAGAACgccgcUGACCUCgugcucagccaGCCGcCGCUGg -3'
miRNA:   3'- gCCUCUUGa----GCUGGAG-----------UGGCuGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 55940 0.69 0.53738
Target:  5'- cCGGGGcga--GGCCgaCGCCGACGCCGc -3'
miRNA:   3'- -GCCUCuugagCUGGa-GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 17947 0.69 0.547657
Target:  5'- cCGGgugGGAGCagguugCGACUUCGCCGACcuGCCu -3'
miRNA:   3'- -GCC---UCUUGa-----GCUGGAGUGGCUG--CGGc -5'
19096 3' -56.9 NC_004684.1 + 2493 0.69 0.55696
Target:  5'- uGGAGcuGCUaugagggCGGCCUCAaCGACGCCc -3'
miRNA:   3'- gCCUCu-UGA-------GCUGGAGUgGCUGCGGc -5'
19096 3' -56.9 NC_004684.1 + 46524 0.7 0.477328
Target:  5'- aCGGuGGACUUG-CCUgCACCGgucggaagaacgACGCCGg -3'
miRNA:   3'- -GCCuCUUGAGCuGGA-GUGGC------------UGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 30070 0.7 0.467636
Target:  5'- cCGGccu-CcCGGCCacUCACCGACGCCGa -3'
miRNA:   3'- -GCCucuuGaGCUGG--AGUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 43256 0.71 0.448562
Target:  5'- cCGGAGAGCaCGGCCaugUCGCCG-CGCa- -3'
miRNA:   3'- -GCCUCUUGaGCUGG---AGUGGCuGCGgc -5'
19096 3' -56.9 NC_004684.1 + 34361 0.76 0.205987
Target:  5'- gGGAGAACaUGACCgCACCGACaCCGa -3'
miRNA:   3'- gCCUCUUGaGCUGGaGUGGCUGcGGC- -5'
19096 3' -56.9 NC_004684.1 + 62128 0.74 0.298758
Target:  5'- uCGGuGAACUCGuugcacGCCUCGCCG-UGCCc -3'
miRNA:   3'- -GCCuCUUGAGC------UGGAGUGGCuGCGGc -5'
19096 3' -56.9 NC_004684.1 + 25510 0.73 0.328418
Target:  5'- cCGGcGAGCggcuguucUCGACC--GCCGACGCCGg -3'
miRNA:   3'- -GCCuCUUG--------AGCUGGagUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 13307 0.73 0.336166
Target:  5'- uCGGAGcAGCUguaCGACUUCugCGACguGCCGg -3'
miRNA:   3'- -GCCUC-UUGA---GCUGGAGugGCUG--CGGC- -5'
19096 3' -56.9 NC_004684.1 + 2554 0.72 0.368474
Target:  5'- uGGAGcGCgcggaGGCCuUCGCCGAgGCCGg -3'
miRNA:   3'- gCCUCuUGag---CUGG-AGUGGCUgCGGC- -5'
19096 3' -56.9 NC_004684.1 + 36719 0.72 0.374343
Target:  5'- cCGGGGGuuaccGCaUCGACCUguucgccgucccggCGCUGACGCCGc -3'
miRNA:   3'- -GCCUCU-----UG-AGCUGGA--------------GUGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 9277 0.71 0.429927
Target:  5'- uGGccGAugUCGAgUUC-CCGACGCCGa -3'
miRNA:   3'- gCCu-CUugAGCUgGAGuGGCUGCGGC- -5'
19096 3' -56.9 NC_004684.1 + 9142 0.71 0.439188
Target:  5'- uGGucaAGAuGCUCGGCCUgGCCGACGacaCCGu -3'
miRNA:   3'- gCC---UCU-UGAGCUGGAgUGGCUGC---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.