Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19098 | 3' | -53.3 | NC_004684.1 | + | 47246 | 0.7 | 0.659069 |
Target: 5'- gGGCgcgagGGUAgcgGCUGCGCGGAacAGGCCCUc -3' miRNA: 3'- -CUGa----CCAU---UGGCGCGUUU--UCUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 7066 | 0.69 | 0.69296 |
Target: 5'- ---cGGUGAUCGCGCucgaacgcauugccGAGGCCCUGg -3' miRNA: 3'- cugaCCAUUGGCGCGuu------------UUCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 42209 | 0.69 | 0.702708 |
Target: 5'- aGCUGGUGGCCGaCGU----GGCCgCCGg -3' miRNA: 3'- cUGACCAUUGGC-GCGuuuuCUGG-GGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 19236 | 0.69 | 0.702708 |
Target: 5'- aACUGGgaGCCGCGCAAc--GCuCCCa -3' miRNA: 3'- cUGACCauUGGCGCGUUuucUG-GGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 61693 | 0.69 | 0.713473 |
Target: 5'- uGGCgucGGU-GCCGUggGCAGGccGGGCCCCGg -3' miRNA: 3'- -CUGa--CCAuUGGCG--CGUUU--UCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 57599 | 0.69 | 0.720962 |
Target: 5'- cGACggUGGUGACCGUGCAcGAGcgguacggccagccACCCgGu -3' miRNA: 3'- -CUG--ACCAUUGGCGCGUuUUC--------------UGGGgC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 62660 | 0.69 | 0.724158 |
Target: 5'- cGGCU-GUGGCCGUGCGcGAGGUCCUGg -3' miRNA: 3'- -CUGAcCAUUGGCGCGUuUUCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 46876 | 0.69 | 0.724158 |
Target: 5'- --gUGGUGuauCCGCGCGAcaugucagccGAGcCCCCGc -3' miRNA: 3'- cugACCAUu--GGCGCGUU----------UUCuGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 56947 | 0.69 | 0.724158 |
Target: 5'- gGACUGGUGcACgGCGCAcagcguGGAGGCCaaCCu -3' miRNA: 3'- -CUGACCAU-UGgCGCGU------UUUCUGG--GGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 57325 | 0.68 | 0.745241 |
Target: 5'- cGACUGGccguaGGCCacacaGaCAAAAGACCCCGc -3' miRNA: 3'- -CUGACCa----UUGGcg---C-GUUUUCUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 15379 | 0.68 | 0.755617 |
Target: 5'- cGCUGGUGAUCG-GCuacGAGGCCgCCa -3' miRNA: 3'- cUGACCAUUGGCgCGuu-UUCUGG-GGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 28128 | 0.68 | 0.755617 |
Target: 5'- uGCUGGUGGCCugcaCGCAcgcAGGCCUCa -3' miRNA: 3'- cUGACCAUUGGc---GCGUuu-UCUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 14087 | 0.68 | 0.755617 |
Target: 5'- cGACcagGGUGACCGgGUGGuguGGcucaGCCCCGg -3' miRNA: 3'- -CUGa--CCAUUGGCgCGUUu--UC----UGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 14378 | 0.68 | 0.759732 |
Target: 5'- nGACUGGcUGACCGacaccgggccgucgcCGCAGGAGAUgCUGc -3' miRNA: 3'- -CUGACC-AUUGGC---------------GCGUUUUCUGgGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 36857 | 0.67 | 0.783959 |
Target: 5'- cGACUGGUcggAGCCGUcgGCGGugaacuucaccGACCCCa -3' miRNA: 3'- -CUGACCA---UUGGCG--CGUUuu---------CUGGGGc -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 27840 | 0.67 | 0.784949 |
Target: 5'- uGCUGGgcACCGagcgcgcugugcaCGCAGGAGugCCgGu -3' miRNA: 3'- cUGACCauUGGC-------------GCGUUUUCugGGgC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 61180 | 0.67 | 0.785939 |
Target: 5'- aGCUGGccgaGAUCGCGCcGGAGGCCaUCGa -3' miRNA: 3'- cUGACCa---UUGGCGCGuUUUCUGG-GGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 13120 | 0.67 | 0.785939 |
Target: 5'- cGGCcgGGUGGCgGCGCuggcuGAGGAgcugUCCCGg -3' miRNA: 3'- -CUGa-CCAUUGgCGCGu----UUUCU----GGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 56851 | 0.67 | 0.785939 |
Target: 5'- aGCUGGUGgagcACCacgaggucaGCGCAcccuGGCCCCGc -3' miRNA: 3'- cUGACCAU----UGG---------CGCGUuuu-CUGGGGC- -5' |
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19098 | 3' | -53.3 | NC_004684.1 | + | 55644 | 0.67 | 0.785939 |
Target: 5'- cGGCUGGcGugCGUGgAGGAGGgCCUGg -3' miRNA: 3'- -CUGACCaUugGCGCgUUUUCUgGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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