miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 8745 1.08 0.00074
Target:  5'- gAGCAAGCCACGGAUAGAGGCCCAGCGc -3'
miRNA:   3'- -UCGUUCGGUGCCUAUCUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 45074 0.77 0.138226
Target:  5'- uGGCGGGCCACGGGgagcaucGGGGUUCGGCa -3'
miRNA:   3'- -UCGUUCGGUGCCUau-----CUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 47903 0.76 0.145927
Target:  5'- aGGCAGGCCACGGucGGcGGCCuCGGCc -3'
miRNA:   3'- -UCGUUCGGUGCCuaUCuCCGG-GUCGc -5'
19100 3' -58 NC_004684.1 + 63906 0.75 0.166918
Target:  5'- uGGC-GGCCACGGu--GcGGCCCGGCGu -3'
miRNA:   3'- -UCGuUCGGUGCCuauCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 24588 0.75 0.166918
Target:  5'- cAGCGAG-UugGGAUcaaggcccuGGAGGCCCGGCa -3'
miRNA:   3'- -UCGUUCgGugCCUA---------UCUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 65338 0.75 0.190075
Target:  5'- aGGCAGGCCAC-GAUGGcGGCCCccagggccaccagGGCGa -3'
miRNA:   3'- -UCGUUCGGUGcCUAUCuCCGGG-------------UCGC- -5'
19100 3' -58 NC_004684.1 + 64701 0.74 0.200837
Target:  5'- cGGcCAGGCCGgGGAUGcGGuGCCCGGCGc -3'
miRNA:   3'- -UC-GUUCGGUgCCUAUcUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 9432 0.74 0.206146
Target:  5'- cGCGagacGGCCAUGG-UGGAGGCCCuGGUGu -3'
miRNA:   3'- uCGU----UCGGUGCCuAUCUCCGGG-UCGC- -5'
19100 3' -58 NC_004684.1 + 2659 0.73 0.222805
Target:  5'- cAGCAggucGGCCACaagauggacccGAUGGAGGCCCuGGCGg -3'
miRNA:   3'- -UCGU----UCGGUGc----------CUAUCUCCGGG-UCGC- -5'
19100 3' -58 NC_004684.1 + 8431 0.73 0.253103
Target:  5'- cGGC-AGCUcgGCGGAcAG-GGCCCGGCGc -3'
miRNA:   3'- -UCGuUCGG--UGCCUaUCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 2004 0.72 0.259555
Target:  5'- uGGCAGcGCCugGG-UGGGGGUCC-GCGa -3'
miRNA:   3'- -UCGUU-CGGugCCuAUCUCCGGGuCGC- -5'
19100 3' -58 NC_004684.1 + 44960 0.72 0.26614
Target:  5'- cGCGccgacGGCgAUGGcguuGAGGCCCAGCGg -3'
miRNA:   3'- uCGU-----UCGgUGCCuau-CUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 701 0.72 0.266141
Target:  5'- aGGUcAGCCGCcGGUGGAcGGCCUGGCGc -3'
miRNA:   3'- -UCGuUCGGUGcCUAUCU-CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 43423 0.72 0.272861
Target:  5'- gAGCGAGCCGucCGGGUuguacAGGCUCGGCa -3'
miRNA:   3'- -UCGUUCGGU--GCCUAuc---UCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 28981 0.72 0.272861
Target:  5'- gAGCuGAGCCuGCGcGAccgGGAGGCCUAGCu -3'
miRNA:   3'- -UCG-UUCGG-UGC-CUa--UCUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 7342 0.72 0.279716
Target:  5'- cGCGcGCCACGaGUGcGAGGCCUGGCa -3'
miRNA:   3'- uCGUuCGGUGCcUAU-CUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 40356 0.72 0.286709
Target:  5'- uGGCGgcGGCCuuGGccuUGGGGGCCuCGGCGg -3'
miRNA:   3'- -UCGU--UCGGugCCu--AUCUCCGG-GUCGC- -5'
19100 3' -58 NC_004684.1 + 47356 0.71 0.301104
Target:  5'- -cCAGGCCACGGu---AGGaCCCGGCGg -3'
miRNA:   3'- ucGUUCGGUGCCuaucUCC-GGGUCGC- -5'
19100 3' -58 NC_004684.1 + 49504 0.71 0.31605
Target:  5'- cGGCGcGUCGgGGGUguAGcGGCCCAGCGu -3'
miRNA:   3'- -UCGUuCGGUgCCUA--UCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 2060 0.71 0.323731
Target:  5'- cGGCcagcGCCACGuGGUGGAGcGCgCCAGCu -3'
miRNA:   3'- -UCGuu--CGGUGC-CUAUCUC-CG-GGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.