miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 63851 0.68 0.494647
Target:  5'- cGCugucgguGCCACGugcgcGGUGGcggccuucaucGGGCCCAGCGg -3'
miRNA:   3'- uCGuu-----CGGUGC-----CUAUC-----------UCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 27536 0.69 0.406223
Target:  5'- uGCGcAGCCGCcugcuGGAgcuaaucgacuaGGAGGCCCGGUGg -3'
miRNA:   3'- uCGU-UCGGUG-----CCUa-----------UCUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 66515 0.69 0.426475
Target:  5'- cGCGGGCCGCcuucAGcgcGGCCCGGCGg -3'
miRNA:   3'- uCGUUCGGUGccuaUCu--CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 43413 0.69 0.435876
Target:  5'- cGCc-GCCGCcGAacccGAGGCCCGGCGa -3'
miRNA:   3'- uCGuuCGGUGcCUau--CUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 64930 0.68 0.445396
Target:  5'- cAGguGGCgGCGGu--GAGcGCCUGGCGg -3'
miRNA:   3'- -UCguUCGgUGCCuauCUC-CGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 12663 0.68 0.474632
Target:  5'- cGCGAGCUGCGcucgcuGGUGGAGGCCgacgaGGCc -3'
miRNA:   3'- uCGUUCGGUGC------CUAUCUCCGGg----UCGc -5'
19100 3' -58 NC_004684.1 + 2978 0.68 0.48459
Target:  5'- cGGguGGCCaACGGGUuGAGGCCaucaccGCGc -3'
miRNA:   3'- -UCguUCGG-UGCCUAuCUCCGGgu----CGC- -5'
19100 3' -58 NC_004684.1 + 47097 0.68 0.48459
Target:  5'- cGGCGGuGCCG-GGAcgcGGGGGUCCGGCa -3'
miRNA:   3'- -UCGUU-CGGUgCCUa--UCUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 9893 0.68 0.494647
Target:  5'- gAGCAGGCCGCcGAcgAGuGGUCCGGg- -3'
miRNA:   3'- -UCGUUCGGUGcCUa-UCuCCGGGUCgc -5'
19100 3' -58 NC_004684.1 + 43617 0.7 0.38134
Target:  5'- cAGCccGGCCACGGu--GuGGCCgAGCGc -3'
miRNA:   3'- -UCGu-UCGGUGCCuauCuCCGGgUCGC- -5'
19100 3' -58 NC_004684.1 + 61929 0.7 0.355833
Target:  5'- uGCGGGCCACGGcacccgccGGGCCUGGUGc -3'
miRNA:   3'- uCGUUCGGUGCCuauc----UCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 2060 0.71 0.323731
Target:  5'- cGGCcagcGCCACGuGGUGGAGcGCgCCAGCu -3'
miRNA:   3'- -UCGuu--CGGUGC-CUAUCUC-CG-GGUCGc -5'
19100 3' -58 NC_004684.1 + 65338 0.75 0.190075
Target:  5'- aGGCAGGCCAC-GAUGGcGGCCCccagggccaccagGGCGa -3'
miRNA:   3'- -UCGUUCGGUGcCUAUCuCCGGG-------------UCGC- -5'
19100 3' -58 NC_004684.1 + 9432 0.74 0.206146
Target:  5'- cGCGagacGGCCAUGG-UGGAGGCCCuGGUGu -3'
miRNA:   3'- uCGU----UCGGUGCCuAUCUCCGGG-UCGC- -5'
19100 3' -58 NC_004684.1 + 701 0.72 0.266141
Target:  5'- aGGUcAGCCGCcGGUGGAcGGCCUGGCGc -3'
miRNA:   3'- -UCGuUCGGUGcCUAUCU-CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 28981 0.72 0.272861
Target:  5'- gAGCuGAGCCuGCGcGAccgGGAGGCCUAGCu -3'
miRNA:   3'- -UCG-UUCGG-UGC-CUa--UCUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 40356 0.72 0.286709
Target:  5'- uGGCGgcGGCCuuGGccuUGGGGGCCuCGGCGg -3'
miRNA:   3'- -UCGU--UCGGugCCu--AUCUCCGG-GUCGC- -5'
19100 3' -58 NC_004684.1 + 47356 0.71 0.301104
Target:  5'- -cCAGGCCACGGu---AGGaCCCGGCGg -3'
miRNA:   3'- ucGUUCGGUGCCuaucUCC-GGGUCGC- -5'
19100 3' -58 NC_004684.1 + 49504 0.71 0.31605
Target:  5'- cGGCGcGUCGgGGGUguAGcGGCCCAGCGu -3'
miRNA:   3'- -UCGUuCGGUgCCUA--UCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 23834 0.71 0.323731
Target:  5'- gAGCGgcuggacaaGGCCAaGGccgagugGGAGGCCCAGUGg -3'
miRNA:   3'- -UCGU---------UCGGUgCCua-----UCUCCGGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.