miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 3' -58 NC_004684.1 + 262 0.68 0.445396
Target:  5'- uGCAGGCCgACGGc--GAGGCCUucguGCa -3'
miRNA:   3'- uCGUUCGG-UGCCuauCUCCGGGu---CGc -5'
19100 3' -58 NC_004684.1 + 701 0.72 0.266141
Target:  5'- aGGUcAGCCGCcGGUGGAcGGCCUGGCGc -3'
miRNA:   3'- -UCGuUCGGUGcCUAUCU-CCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 2004 0.72 0.259555
Target:  5'- uGGCAGcGCCugGG-UGGGGGUCC-GCGa -3'
miRNA:   3'- -UCGUU-CGGugCCuAUCUCCGGGuCGC- -5'
19100 3' -58 NC_004684.1 + 2060 0.71 0.323731
Target:  5'- cGGCcagcGCCACGuGGUGGAGcGCgCCAGCu -3'
miRNA:   3'- -UCGuu--CGGUGC-CUAUCUC-CG-GGUCGc -5'
19100 3' -58 NC_004684.1 + 2659 0.73 0.222805
Target:  5'- cAGCAggucGGCCACaagauggacccGAUGGAGGCCCuGGCGg -3'
miRNA:   3'- -UCGU----UCGGUGc----------CUAUCUCCGGG-UCGC- -5'
19100 3' -58 NC_004684.1 + 2978 0.68 0.48459
Target:  5'- cGGguGGCCaACGGGUuGAGGCCaucaccGCGc -3'
miRNA:   3'- -UCguUCGG-UGCCUAuCUCCGGgu----CGC- -5'
19100 3' -58 NC_004684.1 + 3823 0.7 0.359163
Target:  5'- cGCAGGCCgAUGGAccUgauggcagcggccgaGGAGGCCgAGCGc -3'
miRNA:   3'- uCGUUCGG-UGCCU--A---------------UCUCCGGgUCGC- -5'
19100 3' -58 NC_004684.1 + 6070 0.66 0.610157
Target:  5'- cGCc-GCCGaGGGcGGcGGCCCGGCGg -3'
miRNA:   3'- uCGuuCGGUgCCUaUCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 7342 0.72 0.279716
Target:  5'- cGCGcGCCACGaGUGcGAGGCCUGGCa -3'
miRNA:   3'- uCGUuCGGUGCcUAU-CUCCGGGUCGc -5'
19100 3' -58 NC_004684.1 + 8431 0.73 0.253103
Target:  5'- cGGC-AGCUcgGCGGAcAG-GGCCCGGCGc -3'
miRNA:   3'- -UCGuUCGG--UGCCUaUCuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 8745 1.08 0.00074
Target:  5'- gAGCAAGCCACGGAUAGAGGCCCAGCGc -3'
miRNA:   3'- -UCGUUCGGUGCCUAUCUCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 8945 0.67 0.525358
Target:  5'- cAGCGGGCagucggguccggCACGGGgccGGAGGCaaCGGCGg -3'
miRNA:   3'- -UCGUUCG------------GUGCCUa--UCUCCGg-GUCGC- -5'
19100 3' -58 NC_004684.1 + 9432 0.74 0.206146
Target:  5'- cGCGagacGGCCAUGG-UGGAGGCCCuGGUGu -3'
miRNA:   3'- uCGU----UCGGUGCCuAUCUCCGGG-UCGC- -5'
19100 3' -58 NC_004684.1 + 9893 0.68 0.494647
Target:  5'- gAGCAGGCCGCcGAcgAGuGGUCCGGg- -3'
miRNA:   3'- -UCGUUCGGUGcCUa-UCuCCGGGUCgc -5'
19100 3' -58 NC_004684.1 + 11359 0.66 0.610157
Target:  5'- -cCAGGcCCACGG-UGGuGGCCagCAGCGu -3'
miRNA:   3'- ucGUUC-GGUGCCuAUCuCCGG--GUCGC- -5'
19100 3' -58 NC_004684.1 + 12663 0.68 0.474632
Target:  5'- cGCGAGCUGCGcucgcuGGUGGAGGCCgacgaGGCc -3'
miRNA:   3'- uCGUUCGGUGC------CUAUCUCCGGg----UCGc -5'
19100 3' -58 NC_004684.1 + 15963 0.66 0.619846
Target:  5'- uGCAGGCCuuGGu--GAGGCCgugacacCGGCa -3'
miRNA:   3'- uCGUUCGGugCCuauCUCCGG-------GUCGc -5'
19100 3' -58 NC_004684.1 + 16204 0.68 0.445396
Target:  5'- cGGCcaGGGCgCGCGGuccauGGCCCGGCGc -3'
miRNA:   3'- -UCG--UUCG-GUGCCuaucuCCGGGUCGC- -5'
19100 3' -58 NC_004684.1 + 18027 0.67 0.515036
Target:  5'- cGGCAAgGCCAUGGAcAGccuGGGCCUgaucccgucAGCGc -3'
miRNA:   3'- -UCGUU-CGGUGCCUaUC---UCCGGG---------UCGC- -5'
19100 3' -58 NC_004684.1 + 18377 0.66 0.620923
Target:  5'- cGguGGCCgaucuguucaGCGGGgucGGGCCCGGCc -3'
miRNA:   3'- uCguUCGG----------UGCCUaucUCCGGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.