miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19100 5' -57.3 NC_004684.1 + 48811 0.7 0.438654
Target:  5'- gGCCGCCguucuccaACaGGCCGUCGAUgAuguacuccggGGGCGg -3'
miRNA:   3'- -CGGCGG--------UGcCCGGCAGCUAgU----------UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 15514 0.7 0.448127
Target:  5'- gGCCGCC-CgGGGCCGggCGcUgGAGGCGc -3'
miRNA:   3'- -CGGCGGuG-CCCGGCa-GCuAgUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 53473 0.69 0.466432
Target:  5'- aGCCGCCAgccagcugucgauCuGGCCGUCGGUgAucGCc -3'
miRNA:   3'- -CGGCGGU-------------GcCCGGCAGCUAgUuuCGu -5'
19100 5' -57.3 NC_004684.1 + 28558 0.69 0.467407
Target:  5'- cGCCaggGCCACcaGGCCGUCGggCAccgccAGGCGg -3'
miRNA:   3'- -CGG---CGGUGc-CCGGCAGCuaGU-----UUCGU- -5'
19100 5' -57.3 NC_004684.1 + 26976 0.69 0.467407
Target:  5'- cGCCGCCAUccaGGCCGgugCGAgCGcGGCGg -3'
miRNA:   3'- -CGGCGGUGc--CCGGCa--GCUaGUuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 18672 0.69 0.467407
Target:  5'- uGCCGCCGCuGGGCgCGaCGGuaaccaUCAGccAGCAg -3'
miRNA:   3'- -CGGCGGUG-CCCG-GCaGCU------AGUU--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 37162 0.69 0.467407
Target:  5'- aGCgCGCCGaGGGCCacGUCGcgCcGAGCAu -3'
miRNA:   3'- -CG-GCGGUgCCCGG--CAGCuaGuUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 12905 0.69 0.476221
Target:  5'- cGCCGCCAgCGGugccggugcGCCGUCGGcCAAcuucgccgccgucGGCAc -3'
miRNA:   3'- -CGGCGGU-GCC---------CGGCAGCUaGUU-------------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 61315 0.69 0.477206
Target:  5'- aCCGCCGcCGGGCCGcCGccCucGGCGg -3'
miRNA:   3'- cGGCGGU-GCCCGGCaGCuaGuuUCGU- -5'
19100 5' -57.3 NC_004684.1 + 19329 0.69 0.497101
Target:  5'- cGCCGCCGcCGuGGCCGagCGG--GAGGCGc -3'
miRNA:   3'- -CGGCGGU-GC-CCGGCa-GCUagUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 18075 0.69 0.497101
Target:  5'- gGCCGCCgACGGGUCGauccuggaCGG-CAAGGCc -3'
miRNA:   3'- -CGGCGG-UGCCCGGCa-------GCUaGUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 20802 0.69 0.497101
Target:  5'- cGCCGCCGuCGccGCCGUCGAgcgCGAcugggaauccGGCAc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCUa--GUU----------UCGU- -5'
19100 5' -57.3 NC_004684.1 + 11225 0.69 0.507187
Target:  5'- cGCCGCCGuCGucGCCGUCGucggcCAGGGCc -3'
miRNA:   3'- -CGGCGGU-GCc-CGGCAGCua---GUUUCGu -5'
19100 5' -57.3 NC_004684.1 + 60540 0.69 0.507187
Target:  5'- cGCCGCgCcCGGuGCCGUCGAcacccucgaacUCGAccAGCu -3'
miRNA:   3'- -CGGCG-GuGCC-CGGCAGCU-----------AGUU--UCGu -5'
19100 5' -57.3 NC_004684.1 + 58305 0.68 0.51736
Target:  5'- -gCGUCACGGGCCucGUCGGUCuu-GUc -3'
miRNA:   3'- cgGCGGUGCCCGG--CAGCUAGuuuCGu -5'
19100 5' -57.3 NC_004684.1 + 13282 0.68 0.51736
Target:  5'- gGCCGCCGguGGCUGgugCGcgccGUCGGAGCAg -3'
miRNA:   3'- -CGGCGGUgcCCGGCa--GC----UAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 34126 0.68 0.527613
Target:  5'- uGCuCGUCGCGGuGCUGUUGAgCGAcAGCAc -3'
miRNA:   3'- -CG-GCGGUGCC-CGGCAGCUaGUU-UCGU- -5'
19100 5' -57.3 NC_004684.1 + 56036 0.68 0.527613
Target:  5'- gGCCaccaccguggGCCugGaGGCCGcCG-UCAAGGCGc -3'
miRNA:   3'- -CGG----------CGGugC-CCGGCaGCuAGUUUCGU- -5'
19100 5' -57.3 NC_004684.1 + 52313 0.68 0.536905
Target:  5'- gGCCaCCGCGccgauaaGGCCGUCGAccUCAuccGGCGu -3'
miRNA:   3'- -CGGcGGUGC-------CCGGCAGCU--AGUu--UCGU- -5'
19100 5' -57.3 NC_004684.1 + 3799 0.68 0.537941
Target:  5'- cGCCGCCGCcuuGGCgGUCaagGAUCugcuGGGCGc -3'
miRNA:   3'- -CGGCGGUGc--CCGgCAG---CUAGu---UUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.