miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 3' -56.1 NC_004684.1 + 66846 0.66 0.779899
Target:  5'- -aACCCGGUgcccucCAgGCCUUCG--CCGGGu -3'
miRNA:   3'- gcUGGGCCA------GUgUGGAAGCaaGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 383 0.66 0.779899
Target:  5'- gGugCCGGUCAggauCACCgcCGUggCGGGc -3'
miRNA:   3'- gCugGGCCAGU----GUGGaaGCAagGCCU- -5'
19105 3' -56.1 NC_004684.1 + 27368 0.66 0.779899
Target:  5'- uCGGCCCGGUCuGCGCCgcuaaCGcaggCUGGu -3'
miRNA:   3'- -GCUGGGCCAG-UGUGGaa---GCaa--GGCCu -5'
19105 3' -56.1 NC_004684.1 + 2590 0.66 0.770199
Target:  5'- cCGACCCGaccgagUACGCCgacgcggaGUUCUGGAa -3'
miRNA:   3'- -GCUGGGCca----GUGUGGaag-----CAAGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 46333 0.66 0.770198
Target:  5'- -uGCCCGGUCAgCACCggcaccCGUgcaCGGGu -3'
miRNA:   3'- gcUGGGCCAGU-GUGGaa----GCAag-GCCU- -5'
19105 3' -56.1 NC_004684.1 + 11466 0.66 0.770198
Target:  5'- uCGcCCCGGUC-CACCUUgGccaccagcUCCGGc -3'
miRNA:   3'- -GCuGGGCCAGuGUGGAAgCa-------AGGCCu -5'
19105 3' -56.1 NC_004684.1 + 42857 0.66 0.770198
Target:  5'- gCGGCCCGG-CACACCgcCGUagaUGGc -3'
miRNA:   3'- -GCUGGGCCaGUGUGGaaGCAag-GCCu -5'
19105 3' -56.1 NC_004684.1 + 18417 0.66 0.760365
Target:  5'- gCGGCCCGGcgggCGCACCggCGg-CCGa- -3'
miRNA:   3'- -GCUGGGCCa---GUGUGGaaGCaaGGCcu -5'
19105 3' -56.1 NC_004684.1 + 21186 0.66 0.760365
Target:  5'- gGACUCGGcCACACgUUa--UCCGGGc -3'
miRNA:   3'- gCUGGGCCaGUGUGgAAgcaAGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 7536 0.66 0.750409
Target:  5'- cCGACCUGG-C-CGCCguggcggCGUUCUGGu -3'
miRNA:   3'- -GCUGGGCCaGuGUGGaa-----GCAAGGCCu -5'
19105 3' -56.1 NC_004684.1 + 23661 0.66 0.750409
Target:  5'- uGACCgGGUaCACcgacgGCCUggUCGgcCCGGAc -3'
miRNA:   3'- gCUGGgCCA-GUG-----UGGA--AGCaaGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 20714 0.66 0.74034
Target:  5'- cCGACCCGGUCAC-CCc-CGaaCCcgaGGAg -3'
miRNA:   3'- -GCUGGGCCAGUGuGGaaGCaaGG---CCU- -5'
19105 3' -56.1 NC_004684.1 + 11092 0.67 0.730169
Target:  5'- aCGuCCCGG-CGCGCCa--GggCCGGGc -3'
miRNA:   3'- -GCuGGGCCaGUGUGGaagCaaGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 22836 0.67 0.730169
Target:  5'- uGACCCGaUCACcgGCCUgccgaccggguUCG-UCCGGGc -3'
miRNA:   3'- gCUGGGCcAGUG--UGGA-----------AGCaAGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 42583 0.67 0.729147
Target:  5'- aGACCagcgagcaGGUCaagaacgGCACCUUCGacCCGGc -3'
miRNA:   3'- gCUGGg-------CCAG-------UGUGGAAGCaaGGCCu -5'
19105 3' -56.1 NC_004684.1 + 2985 0.67 0.726075
Target:  5'- gGACggCGGgggCGCACCUUCGUcaccaugcugaugCCGGAc -3'
miRNA:   3'- gCUGg-GCCa--GUGUGGAAGCAa------------GGCCU- -5'
19105 3' -56.1 NC_004684.1 + 31225 0.67 0.719908
Target:  5'- cCGACgCCGGUgACGCCauugccgaugugUUCGacggccUCCGGGa -3'
miRNA:   3'- -GCUG-GGCCAgUGUGG------------AAGCa-----AGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 43287 0.67 0.709564
Target:  5'- gCGugCCGGgcugCgGCACCUUgaaGUUCgGGAu -3'
miRNA:   3'- -GCugGGCCa---G-UGUGGAAg--CAAGgCCU- -5'
19105 3' -56.1 NC_004684.1 + 39146 0.67 0.709564
Target:  5'- uGGCCgGGUC-CACCgcgcUGUgcUCCGGGu -3'
miRNA:   3'- gCUGGgCCAGuGUGGaa--GCA--AGGCCU- -5'
19105 3' -56.1 NC_004684.1 + 63334 0.67 0.699149
Target:  5'- -cACCCGGUCAC-CCggCGauggCCGGu -3'
miRNA:   3'- gcUGGGCCAGUGuGGaaGCaa--GGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.