miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 26428 0.72 0.411359
Target:  5'- aACGGGAuACCGCgCUGgAAcGGCAGCCg -3'
miRNA:   3'- cUGCUUU-UGGCG-GACgUU-CCGUCGGg -5'
19106 3' -55 NC_004684.1 + 12082 0.72 0.42072
Target:  5'- cGACGAGGugCugGCCcGCGcGGCGGCCa -3'
miRNA:   3'- -CUGCUUUugG--CGGaCGUuCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 27222 0.72 0.42072
Target:  5'- cAUGAGcuucGCCGCCaGCAAGGCcGUCCu -3'
miRNA:   3'- cUGCUUu---UGGCGGaCGUUCCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 27531 0.72 0.421663
Target:  5'- gGACGugcgcAGCCGCCUGCuggagcuaaucgacuAGGaGGCCCg -3'
miRNA:   3'- -CUGCuu---UUGGCGGACGu--------------UCCgUCGGG- -5'
19106 3' -55 NC_004684.1 + 54708 0.72 0.4245
Target:  5'- aGCGGAAAUgGCCUcgucggccuccaccaGCGAGcGCAGCUCg -3'
miRNA:   3'- cUGCUUUUGgCGGA---------------CGUUC-CGUCGGG- -5'
19106 3' -55 NC_004684.1 + 58144 0.71 0.459408
Target:  5'- gGAUGAGcACCGCCaGCGucGGCAGCa- -3'
miRNA:   3'- -CUGCUUuUGGCGGaCGUu-CCGUCGgg -5'
19106 3' -55 NC_004684.1 + 53341 0.71 0.459408
Target:  5'- uGACGAAcgccACCGCCuUGCuggucGGGUcGCCCu -3'
miRNA:   3'- -CUGCUUu---UGGCGG-ACGu----UCCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 38464 0.71 0.479449
Target:  5'- cGCGAucACCGCC-GaCAAGGCAGgCaCCg -3'
miRNA:   3'- cUGCUuuUGGCGGaC-GUUCCGUC-G-GG- -5'
19106 3' -55 NC_004684.1 + 18248 0.7 0.510282
Target:  5'- aACGu-GGCCGCCaucgacgGCAAcGGCAcGCCCg -3'
miRNA:   3'- cUGCuuUUGGCGGa------CGUU-CCGU-CGGG- -5'
19106 3' -55 NC_004684.1 + 48028 0.7 0.510282
Target:  5'- -cCGGGAACCGCUgcGCGaucAGGCGGCgCa -3'
miRNA:   3'- cuGCUUUUGGCGGa-CGU---UCCGUCGgG- -5'
19106 3' -55 NC_004684.1 + 46643 0.7 0.510282
Target:  5'- gGACGGc-ACCGCCUGCGgugccuccAGGC-GCUCc -3'
miRNA:   3'- -CUGCUuuUGGCGGACGU--------UCCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 65017 0.7 0.520745
Target:  5'- cGGCGAAggUgGCCaUGuCGAuGGCGGCCa -3'
miRNA:   3'- -CUGCUUuuGgCGG-AC-GUU-CCGUCGGg -5'
19106 3' -55 NC_004684.1 + 26996 0.7 0.520745
Target:  5'- aGugGcuGACCgGCCUGCcgAAGGCcGCCa -3'
miRNA:   3'- -CugCuuUUGG-CGGACG--UUCCGuCGGg -5'
19106 3' -55 NC_004684.1 + 36674 0.7 0.53129
Target:  5'- uGCGAugcCCGCCaGCAucguuGGCGuGCCCa -3'
miRNA:   3'- cUGCUuuuGGCGGaCGUu----CCGU-CGGG- -5'
19106 3' -55 NC_004684.1 + 64267 0.7 0.53129
Target:  5'- cGGCGuacGGCCccucccCCUGCAAGGUGGgCCCg -3'
miRNA:   3'- -CUGCuu-UUGGc-----GGACGUUCCGUC-GGG- -5'
19106 3' -55 NC_004684.1 + 16357 0.7 0.53553
Target:  5'- cGGCGguGGCCGCauccugccgguggacCaGCAGGGCAGCUa -3'
miRNA:   3'- -CUGCuuUUGGCG---------------GaCGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 2026 0.7 0.541912
Target:  5'- cGCGAuGACCGUC-GCccuGGUGGCCCu -3'
miRNA:   3'- cUGCUuUUGGCGGaCGuu-CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 21614 0.69 0.563358
Target:  5'- cGAgGgcGACCGCCUGgAGGuGC-GCCUg -3'
miRNA:   3'- -CUgCuuUUGGCGGACgUUC-CGuCGGG- -5'
19106 3' -55 NC_004684.1 + 52288 0.69 0.563358
Target:  5'- uGACGGcaAggUCgGCCUcCAGGGCGGCCa -3'
miRNA:   3'- -CUGCU--UuuGG-CGGAcGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 40458 0.69 0.563358
Target:  5'- aGGCG---GCCGCCUGCucGGgGGUCUc -3'
miRNA:   3'- -CUGCuuuUGGCGGACGuuCCgUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.