miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 5568 0.99 0.006417
Target:  5'- gGACGAAAACCGCCUGCAAGGCGaCCCg -3'
miRNA:   3'- -CUGCUUUUGGCGGACGUUCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 56872 0.78 0.189722
Target:  5'- cGGCGAGcgGugCGCCUGaccgucGGCGGCCCa -3'
miRNA:   3'- -CUGCUU--UugGCGGACguu---CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 27345 0.77 0.200124
Target:  5'- cGACGAGAGCCGU--GCGAGGgggauCGGCCCg -3'
miRNA:   3'- -CUGCUUUUGGCGgaCGUUCC-----GUCGGG- -5'
19106 3' -55 NC_004684.1 + 37821 0.77 0.22242
Target:  5'- uGCGGccACCGCCuUGUAAGGCagcGGCCCc -3'
miRNA:   3'- cUGCUuuUGGCGG-ACGUUCCG---UCGGG- -5'
19106 3' -55 NC_004684.1 + 42092 0.75 0.280327
Target:  5'- cGACGAAccgccGCCGCCUGguGuGGCcggaaGGCCCu -3'
miRNA:   3'- -CUGCUUu----UGGCGGACguU-CCG-----UCGGG- -5'
19106 3' -55 NC_004684.1 + 22261 0.75 0.280327
Target:  5'- cGCGAGcauggGACCGCCUgGCGGcGGCcaaGGCCCg -3'
miRNA:   3'- cUGCUU-----UUGGCGGA-CGUU-CCG---UCGGG- -5'
19106 3' -55 NC_004684.1 + 41046 0.75 0.294721
Target:  5'- cGACGGAAuggccgagcgcACCGCgucgGCAAucGGCGGCCCg -3'
miRNA:   3'- -CUGCUUU-----------UGGCGga--CGUU--CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 63483 0.74 0.305135
Target:  5'- gGGCGcGAGGCCuccagcugcgccugcGCCaGCAGGGCGGCCUg -3'
miRNA:   3'- -CUGC-UUUUGG---------------CGGaCGUUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 66506 0.74 0.325219
Target:  5'- cGGCGGccucgcGGGCCGCCUuCAGcGCGGCCCg -3'
miRNA:   3'- -CUGCU------UUUGGCGGAcGUUcCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 22189 0.74 0.333201
Target:  5'- cGGCGgcGACCGCCUucggacugGCGcAGGUGGCCUc -3'
miRNA:   3'- -CUGCuuUUGGCGGA--------CGU-UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 875 0.74 0.333201
Target:  5'- -cCGG--GCCGCgCUG-AAGGCGGCCCg -3'
miRNA:   3'- cuGCUuuUGGCG-GACgUUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 55835 0.73 0.349592
Target:  5'- cGCGguAGCCGCUgugguUGCGGGGCgggucgauguGGCCCa -3'
miRNA:   3'- cUGCuuUUGGCGG-----ACGUUCCG----------UCGGG- -5'
19106 3' -55 NC_004684.1 + 45115 0.73 0.36655
Target:  5'- cGCGGGccuuGGCCGCC-GCcAGGCGGUCCc -3'
miRNA:   3'- cUGCUU----UUGGCGGaCGuUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 49191 0.73 0.36655
Target:  5'- cGGCGGcgGCgGCCUGCucGGuCGGCCa -3'
miRNA:   3'- -CUGCUuuUGgCGGACGuuCC-GUCGGg -5'
19106 3' -55 NC_004684.1 + 64937 0.73 0.384066
Target:  5'- cGGCGguGAgCGCCUgGCGGgcGGUGGCCCg -3'
miRNA:   3'- -CUGCuuUUgGCGGA-CGUU--CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 15393 0.72 0.39303
Target:  5'- uACG-AGGCCGCCauCGGGGCGGCCa -3'
miRNA:   3'- cUGCuUUUGGCGGacGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 29564 0.72 0.39303
Target:  5'- aGCGAGAugACCGCUgUGUAGGGCGcGCCg -3'
miRNA:   3'- cUGCUUU--UGGCGG-ACGUUCCGU-CGGg -5'
19106 3' -55 NC_004684.1 + 10704 0.72 0.39303
Target:  5'- cGCGguGGCuCGCaaccgGCAGGGCAGCCa -3'
miRNA:   3'- cUGCuuUUG-GCGga---CGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 44945 0.72 0.402128
Target:  5'- gGGCGGGAucGCCGCCgcgccgacgGCGAuGGCguugaGGCCCa -3'
miRNA:   3'- -CUGCUUU--UGGCGGa--------CGUU-CCG-----UCGGG- -5'
19106 3' -55 NC_004684.1 + 26428 0.72 0.411359
Target:  5'- aACGGGAuACCGCgCUGgAAcGGCAGCCg -3'
miRNA:   3'- cUGCUUU-UGGCG-GACgUU-CCGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.