miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 5849 0.69 0.606845
Target:  5'- -uCGAGGACCagGCgUGCGAcuGGCAGgCCg -3'
miRNA:   3'- cuGCUUUUGG--CGgACGUU--CCGUCgGG- -5'
19106 3' -55 NC_004684.1 + 18248 0.7 0.510282
Target:  5'- aACGu-GGCCGCCaucgacgGCAAcGGCAcGCCCg -3'
miRNA:   3'- cUGCuuUUGGCGGa------CGUU-CCGU-CGGG- -5'
19106 3' -55 NC_004684.1 + 48028 0.7 0.510282
Target:  5'- -cCGGGAACCGCUgcGCGaucAGGCGGCgCa -3'
miRNA:   3'- cuGCUUUUGGCGGa-CGU---UCCGUCGgG- -5'
19106 3' -55 NC_004684.1 + 40458 0.69 0.563358
Target:  5'- aGGCG---GCCGCCUGCucGGgGGUCUc -3'
miRNA:   3'- -CUGCuuuUGGCGGACGuuCCgUCGGG- -5'
19106 3' -55 NC_004684.1 + 21614 0.69 0.563358
Target:  5'- cGAgGgcGACCGCCUGgAGGuGC-GCCUg -3'
miRNA:   3'- -CUgCuuUUGGCGGACgUUC-CGuCGGG- -5'
19106 3' -55 NC_004684.1 + 7927 0.69 0.573084
Target:  5'- gGugGAGAACCcaggcaagGCCUuccGCAaggccauGGGCAGCuCCa -3'
miRNA:   3'- -CugCUUUUGG--------CGGA---CGU-------UCCGUCG-GG- -5'
19106 3' -55 NC_004684.1 + 47121 0.69 0.574167
Target:  5'- cGGCaGAGcGugCGCCUcggugGCGuAGGCGGCCCc -3'
miRNA:   3'- -CUG-CUU-UugGCGGA-----CGU-UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 17565 0.69 0.585024
Target:  5'- gGACGAGGugCGCgcaCUGUAAGGU-GCaCCg -3'
miRNA:   3'- -CUGCUUUugGCG---GACGUUCCGuCG-GG- -5'
19106 3' -55 NC_004684.1 + 63046 0.69 0.595919
Target:  5'- cAUGggGACCGCCUaacgGUugguGGCGGCUa -3'
miRNA:   3'- cUGCuuUUGGCGGA----CGuu--CCGUCGGg -5'
19106 3' -55 NC_004684.1 + 38464 0.71 0.479449
Target:  5'- cGCGAucACCGCC-GaCAAGGCAGgCaCCg -3'
miRNA:   3'- cUGCUuuUGGCGGaC-GUUCCGUC-G-GG- -5'
19106 3' -55 NC_004684.1 + 53341 0.71 0.459408
Target:  5'- uGACGAAcgccACCGCCuUGCuggucGGGUcGCCCu -3'
miRNA:   3'- -CUGCUUu---UGGCGG-ACGu----UCCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 27531 0.72 0.421663
Target:  5'- gGACGugcgcAGCCGCCUGCuggagcuaaucgacuAGGaGGCCCg -3'
miRNA:   3'- -CUGCuu---UUGGCGGACGu--------------UCCgUCGGG- -5'
19106 3' -55 NC_004684.1 + 63483 0.74 0.305135
Target:  5'- gGGCGcGAGGCCuccagcugcgccugcGCCaGCAGGGCGGCCUg -3'
miRNA:   3'- -CUGC-UUUUGG---------------CGGaCGUUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 66506 0.74 0.325219
Target:  5'- cGGCGGccucgcGGGCCGCCUuCAGcGCGGCCCg -3'
miRNA:   3'- -CUGCU------UUUGGCGGAcGUUcCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 22189 0.74 0.333201
Target:  5'- cGGCGgcGACCGCCUucggacugGCGcAGGUGGCCUc -3'
miRNA:   3'- -CUGCuuUUGGCGGA--------CGU-UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 49191 0.73 0.36655
Target:  5'- cGGCGGcgGCgGCCUGCucGGuCGGCCa -3'
miRNA:   3'- -CUGCUuuUGgCGGACGuuCC-GUCGGg -5'
19106 3' -55 NC_004684.1 + 64937 0.73 0.384066
Target:  5'- cGGCGguGAgCGCCUgGCGGgcGGUGGCCCg -3'
miRNA:   3'- -CUGCuuUUgGCGGA-CGUU--CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 15393 0.72 0.39303
Target:  5'- uACG-AGGCCGCCauCGGGGCGGCCa -3'
miRNA:   3'- cUGCuUUUGGCGGacGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 10704 0.72 0.39303
Target:  5'- cGCGguGGCuCGCaaccgGCAGGGCAGCCa -3'
miRNA:   3'- cUGCuuUUG-GCGga---CGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 12082 0.72 0.42072
Target:  5'- cGACGAGGugCugGCCcGCGcGGCGGCCa -3'
miRNA:   3'- -CUGCUUUugG--CGGaCGUuCCGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.