Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19106 | 3' | -55 | NC_004684.1 | + | 55543 | 0.65 | 0.787626 |
Target: 5'- cACGAAcucgcgccgcuGGCCGCCgugGCccGGUGGCCg -3' miRNA: 3'- cUGCUU-----------UUGGCGGa--CGuuCCGUCGGg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 49039 | 0.65 | 0.787626 |
Target: 5'- aGCGGcaccgcGCCGCCggucgGCuccgGGGGCGGCaCCg -3' miRNA: 3'- cUGCUuu----UGGCGGa----CG----UUCCGUCG-GG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 38735 | 0.65 | 0.786644 |
Target: 5'- uGCGuc-ACCGCCgucucgcgGCAccggaacGGGUAGUCCa -3' miRNA: 3'- cUGCuuuUGGCGGa-------CGU-------UCCGUCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 54270 | 0.65 | 0.787626 |
Target: 5'- cGugGAGaAGCUGCCgcgcuggccgGUggGGCGGCg- -3' miRNA: 3'- -CugCUU-UUGGCGGa---------CGuuCCGUCGgg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 13969 | 0.65 | 0.787626 |
Target: 5'- uGACGgcAGUCGCgCgGCGcAGGCcAGCCCg -3' miRNA: 3'- -CUGCuuUUGGCG-GaCGU-UCCG-UCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 40356 | 0.65 | 0.787626 |
Target: 5'- uGGCGGcgGCCuuggccuuggggGCCUcgGCGGuGGCGGCCUu -3' miRNA: 3'- -CUGCUuuUGG------------CGGA--CGUU-CCGUCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 4584 | 0.65 | 0.787626 |
Target: 5'- -cUGAAAGcucccCCGCCUGCccGGCAaCCCc -3' miRNA: 3'- cuGCUUUU-----GGCGGACGuuCCGUcGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 14039 | 0.65 | 0.787626 |
Target: 5'- gGGCGAc--CCGaCCaGCAAGGCGGUg- -3' miRNA: 3'- -CUGCUuuuGGC-GGaCGUUCCGUCGgg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 44520 | 0.66 | 0.736818 |
Target: 5'- aGCGucuuGGCCGCCgu---GGUGGCCCg -3' miRNA: 3'- cUGCuu--UUGGCGGacguuCCGUCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 1550 | 0.66 | 0.767706 |
Target: 5'- aGCGGcccccacAACCGCCUGCugauGGUGcGCCUg -3' miRNA: 3'- cUGCUu------UUGGCGGACGuu--CCGU-CGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 31289 | 0.66 | 0.757533 |
Target: 5'- cGGCGGcuACCGCC-GUAccucggugaccGGGCAGaCCa -3' miRNA: 3'- -CUGCUuuUGGCGGaCGU-----------UCCGUCgGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 505 | 0.66 | 0.757533 |
Target: 5'- aACGAcacgcuccugGAGCUG-CUGCAAGGCcuGGaCCCg -3' miRNA: 3'- cUGCU----------UUUGGCgGACGUUCCG--UC-GGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 26428 | 0.66 | 0.777741 |
Target: 5'- aGCGggGuUCGCC-GCc-GGUGGCCCg -3' miRNA: 3'- cUGCuuUuGGCGGaCGuuCCGUCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 10369 | 0.66 | 0.767706 |
Target: 5'- cGCGAGAucgcgcgcACCGCCggGUAccAGGCcGCCa -3' miRNA: 3'- cUGCUUU--------UGGCGGa-CGU--UCCGuCGGg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 3524 | 0.66 | 0.736818 |
Target: 5'- cGACGGguGGGCCGaCCUggcggugcaagGCAAGGCAuUCCu -3' miRNA: 3'- -CUGCU--UUUGGC-GGA-----------CGUUCCGUcGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 11668 | 0.66 | 0.757533 |
Target: 5'- cGGCGGccaacguGACCGCCgcGCAA-GCAGCUg -3' miRNA: 3'- -CUGCUu------UUGGCGGa-CGUUcCGUCGGg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 7377 | 0.66 | 0.736817 |
Target: 5'- aGACGAGAccccCCGCCUGC---GCcGUCCa -3' miRNA: 3'- -CUGCUUUu---GGCGGACGuucCGuCGGG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 8690 | 0.66 | 0.781713 |
Target: 5'- uGGCGcAGACCGCCUaCGAcgacgaggacuccauGGCGGCgCu -3' miRNA: 3'- -CUGCuUUUGGCGGAcGUU---------------CCGUCGgG- -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 2432 | 0.66 | 0.736818 |
Target: 5'- cGGCGAcaAGGCCgacaucGCCcGCcuGGGCGGCCa -3' miRNA: 3'- -CUGCU--UUUGG------CGGaCGu-UCCGUCGGg -5' |
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19106 | 3' | -55 | NC_004684.1 | + | 41442 | 0.66 | 0.767706 |
Target: 5'- cGGCGGu-GCCGCCggugucaGUggGGCuGaCCCc -3' miRNA: 3'- -CUGCUuuUGGCGGa------CGuuCCGuC-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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